Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00708 ATGCACGTCACGTCCTCACATAGCCACATGAAAGCTGAGCTTAAGGGCACGTCCGTTTCCTTTCAAAACCCTACTACTCTCTTTAACACACCTCACAACCCTCTCTCGGGAGCACTCAAAGGGTGTCTGGGAAGCCTGGATGGAGCTTGTATTGAGAAGCTCTTGCTGCACTGTGCCAGCGCTTTGGAGAGCAACGACATCACCTTGGCTCAACAGGTCATGTGGGTGCTCAACAACGTTGCTTCCCCTGTGGGGGACACCAACCAAAGACTCACCTCGTGGTTTCTCAGAGCATTAATCTCTAGGGCTTCAAGAATTTGCCCTACTGCCATGAGTTTCAAAGGAAGCAACACCATTCAAAGGAGGCTCATGAGCGTCACCGAGCTGGCCGGGTATGTGGATCTTATTCCTTGGCATAGATTTGGGTATTGTGCATCCAATAATGAAATTTTCAAAGCAATAACGGGGTACCAAAGGGTACATATTCTAGATTTTAGTATAACCCATTGTATGCAATGGCCTACTTTTATAGATGCATTGGCCAAAAACCCTGAAGGACCTCCTTCACTCAGAATCACAGTTCCATTTTGTAGACCACACGTACCCCCCCTGGTCAATGTATCTATACATGAGGTTGGTTTACGTTTAGGGAATTTCGCCAGGTTCAGAGATGTCCCTTTTGAATTCAACGTTATAGGAAACACAGGACCGTTAACACCTGTGGAATTGAGCGATGAATCATCTAACTTTCATTTTGAAGCAATGTTAAGTCTCTTGAATCCTACTACACTAAACCTTAGGGAAGATGAAGCTTTGGTCATAAATTGCCAAAATTGGCTGCGCTATTTGTCTGATGATAGAAAGGGAAGCCGCCAAAGTCTTTCCCTTAGGGATGCTTTTTTAAATCTAATAAAAGGTCTTAACCCCCGGATAGTGCTCTTGGTTGATGAGGATTGTGACCTTAGTGCATCTAGTCTCACGTCAAGAATCACCACATGTTTCAACCATCTTTGGATACCCTTTGACGCATTGGAGACCTTTTTGCCTAAAGATAGTGGTCAGAGGGCAGAGTTTGAATCCGACATAGGCCAGAAGATAGAGAACATCATAAGCTTTGAAGGGCACCAAAGAATCGAGAGGTTGGAGTGTGGGGTGCAAATGTCCCAAAGAATGAAAAATGTTGGTTACCTCAATGTTCAATTTTGTGATGAAACTGTTAGGGAAGTTAAAGGTTTGCTAGATGAGCATTCCAGTGGGTGGGGGATGAAAAGAGAAGAAGGTATGCTAGTTCTCACATGGAAAGGAAACAGCTGTGTCTTTGCGACAGCTTGGGTCCCCTGTGAAATAAGGGATCATGTTGGAATGGATGCAAGTCTGCCTTAA 1383 0.4461 MHVTSSHSHMKAELKGTSVSFQNPTTLFNTPHNPLSGALKGCLGSLDGACIEKLLLHCASALESNDITLAQQVMWVLNNVASPVGDTNQRLTSWFLRALISRASRICPTAMSFKGSNTIQRRLMSVTELAGYVDLIPWHRFGYCASNNEIFKAITGYQRVHILDFSITHCMQWPTFIDALAKNPEGPPSLRITVPFCRPHVPPLVNVSIHEVGLRLGNFARFRDVPFEFNVIGNTGPLTPVELSDESSNFHFEAMLSLLNPTTLNLREDEALVINCQNWLRYLSDDRKGSRQSLSLRDAFLNLIKGLNPRIVLLVDEDCDLSASSLTSRITTCFNHLWIPFDALETFLPKDSGQRAEFESDIGQKIENIISFEGHQRIERLECGVQMSQRMKNVGYLNVQFCDETVREVKGLLDEHSSGWGMKREEGMLVLTWKGNSCVFATAWVPCEIRDHVGMDASLP 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00708 460 Pfam GRAS domain family 52 444 IPR005202 -
Vian11g00708 460 ProSiteProfiles GRAS family profile. 42 445 IPR005202 -
Vian11g00708 460 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 51 434 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00708 Vian-Chr11 7517174 7518556 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00708 25 447 GRAS Transcription Factor Family AT3G49950 44.213 1.12e-118 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian11g00708 GRAS 4.4e-86 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00708 - - gmx:100805056 867.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00708 11 7517174 7518556 Vian11g00708 11 7517174 7518556 ECH