Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00690 ATGAGGGTTGCTATTGTCACAAGAGCAAACCAATTTTTCATTGAAGTTGGTGCCCAAGAAACAGTTGTAGCAATCAAGAAGAAAATAGAGCAACTTCATGGGGTTCCAGTGGCTTCACAAGTCCTATCAGTTACTGGGTGGGAACTAGTTGATGGATTAGACATGGATGATTATCCAATAGTGACTGAAGGTACAAAAATTGACCTCACCATTAAACCAGCAGAGCCACACCCTAACAAAATGCAAATCACAGTGAAATTTTCAGCTAAAAAGCTCAGCATTGAGGTGGACAGAACTGACACTGTTCGTAGCTTGAAGGAAAAAATTCACATCATTGATAGCACCCCCATCAAAAGAATGACACTTTACTTTTCTGGGACTGAACTGGATGAAGATTTTAGAACCTTGAGTGAATATGGCATACGTGAATTTTCTGAGATTGTGGCGTTCCTCAAGACCATGAATCGATCAAGAGATGAACCTCCCACAAGGAAGTTAACCTTCGTTGTACAAACTTCTTCTAGCTTGCTTAATGAAGCCACCATTCCACTGGAGATGAGAGATGCAAACACAGTGAACGAGTTGAAGCAGTTACTGATAAGCAGGAAGATTCTGCCTGGTGATGACTATTTGTTTATACACAGACAGAGGATCATGCGTGATAGTTGTAGCCTCAGGTGGCATGGAGTTGAAAATGGAGACTGTCTCTATGTGTTTAAGGGAACAGTTAGCACTGGTGGGTTTGCATGA 750 0.416 MRVAIVTRANQFFIEVGAQETVVAIKKKIEQLHGVPVASQVLSVTGWELVDGLDMDDYPIVTEGTKIDLTIKPAEPHPNKMQITVKFSAKKLSIEVDRTDTVRSLKEKIHIIDSTPIKRMTLYFSGTELDEDFRTLSEYGIREFSEIVAFLKTMNRSRDEPPTRKLTFVVQTSSSLLNEATIPLEMRDANTVNELKQLLISRKILPGDDYLFIHRQRIMRDSCSLRWHGVENGDCLYVFKGTVSTGGFA 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00690 249 Gene3D - 80 152 - -
Vian11g00690 249 ProSiteProfiles Ubiquitin domain profile. 166 238 IPR000626 GO:0005515
Vian11g00690 249 CDD Ubl_ubiquitin_like 181 239 - -
Vian11g00690 249 Gene3D - 153 244 - -
Vian11g00690 249 PANTHER UV EXCISION REPAIR PROTEIN RAD23 81 153 - -
Vian11g00690 249 SUPERFAMILY Ubiquitin-like 1 75 IPR029071 -
Vian11g00690 249 ProSiteProfiles Ubiquitin domain profile. 81 156 IPR000626 GO:0005515
Vian11g00690 249 CDD Ubl_ubiquitin_like 83 148 - -
Vian11g00690 249 ProSiteProfiles Ubiquitin domain profile. 1 60 IPR000626 GO:0005515
Vian11g00690 249 Gene3D - 1 73 - -
Vian11g00690 249 SMART ubq_7 81 152 IPR000626 GO:0005515
Vian11g00690 249 SMART ubq_7 1 72 IPR000626 GO:0005515
Vian11g00690 249 SMART ubq_7 164 241 IPR000626 GO:0005515
Vian11g00690 249 SUPERFAMILY Ubiquitin-like 74 159 IPR029071 -
Vian11g00690 249 SUPERFAMILY Ubiquitin-like 176 241 IPR029071 -
Vian11g00690 249 Pfam Ubiquitin family 83 152 IPR000626 GO:0005515
Vian11g00690 249 Pfam Ubiquitin family 8 73 IPR000626 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00690 81 152 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.986 1.30e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00690 - - gmx:100781557 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00690 11 7285550 7286299 Vian11g00690 11 7285550 7286299 ECH