Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00686 ATGAACGACCTTCTCACTGATTCATTTGTTGGTGAAGCTAGTAATGGCCAGCCTTCTAGAGAAAGTGACATTGAAATGGGACAGGTTCCGAGAAGTAACTCTGATATGGGAATGGAAGCTTTTAATAAGCAGATCCATGAGGCTGATAAACAGATCGATAAGTTGGCGGTGCTACTTCAAAAGCTAAAGGAAGCTAATGAGGAATCGAAAGCTGTTACAAAAGCATCTGCCATGAAAGGCATCAAGAAAAGGATGGAGAAAGATATTGATGAAGTTGGGAAGATTGCTCATGGTGTTAAAACAAAGATTGAGGCTATAAACAGAGATGTATTGAGCTATTGGCTGAATATTAACCTATCTAATAGACAAAAGCCTGGCTGTGAGAAAGGAACGGGTATTGACAGAGCAAGAATGAATATGACAAATTCCTTGACTAAAAAATTCAAGGATCTCATGACAGAGTTCCAGACTCTTAGACAAAGAATACAAGATGAATATCGTGAGGTTGTGGAGAGAAGAGTTATAACAGTTACTGGGACTAGGCCAGATGATGAGACTATTGATCGCCTGATAGAAACTGGAAACAGTGAGCAAATCTTCCAGAGAGCAATCCTAGAAGCAGGCCGAGGACAGGTAGTGAACACAGTAGAAGAAATTCAGGAGAGACATGATGCTGTGAAAGAGATTGAGAAAAAACTTCTTGATTTACACCAGGTCAACAACGCAGTCGATCATGTCCAGAGAGGGACAAGTGCACTTCAAAATGCTAAGAAACTCCAGAAGAACTCACGAAAATGGATGTGCATTGCCATCATTATACTGTTGATAATAGTAGCTATCATAGTTGTGGGTGTTCTCAAACCTTGGAAGAGTAGCTAG 879 0.4039 MNDLLTDSFVGEASNGQPSRESDIEMGQVPRSNSDMGMEAFNKQIHEADKQIDKLAVLLQKLKEANEESKAVTKASAMKGIKKRMEKDIDEVGKIAHGVKTKIEAINRDVLSYWLNINLSNRQKPGCEKGTGIDRARMNMTNSLTKKFKDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDRLIETGNSEQIFQRAILEAGRGQVVNTVEEIQERHDAVKEIEKKLLDLHQVNNAVDHVQRGTSALQNAKKLQKNSRKWMCIAIIILLIIVAIIVVGVLKPWKSS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00686 292 SMART SynN_4 33 167 IPR006011 GO:0016020
Vian11g00686 292 Gene3D - 242 287 - -
Vian11g00686 292 Pfam Syntaxin 41 239 IPR006011 GO:0016020
Vian11g00686 292 SUPERFAMILY t-snare proteins 38 239 IPR010989 GO:0016020|GO:0016192
Vian11g00686 292 CDD SynN 38 203 IPR006011 GO:0016020
Vian11g00686 292 Gene3D - 34 241 - -
Vian11g00686 292 FunFam Syntaxin 132 33 170 - -
Vian11g00686 292 Pfam SNARE domain 238 282 IPR000727 -
Vian11g00686 292 Coils Coil 38 75 - -
Vian11g00686 292 MobiDBLite consensus disorder prediction 1 35 - -
Vian11g00686 292 PANTHER SYNTAXIN 37 238 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00686 Vian-Chr11 7249853 7253148 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00686 1 289 SNARE and Associated Proteins AT3G03800 56.270 6.44e-105 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00686 K08486 - gmx:100800991 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00686 11 7249853 7253148 Vian11g00686 11 7249853 7253148 ECH