Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00682 ATGGCTACTATAGATTCTGACGTGACCATGGTTCCGGCTGGCGAACCCTCCAGCAGCACAGGTCCTTCTTCATCCAGCAAGAAGCCCAAGCGATTCGAGATCAAGAAGTGGAATGCCGTTTCTCTATGGGCATGGGATATCGTTGTGGACAATTGTGCTATCTGCAGGAACCATATCATGGATCTCTGTATTGAGTGTCAGGCCAACCAGGCTAGCGCTACTAGTGAGGAATGCACTGTAGCTTGGGGTTTTAGAGCCAGTGAGGGAGTGAGGATGTACACAGCTGGGAATAAGGGAGTGATGTTGGAAGAGAGACTGAATGCATTTCACTTGGGAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCAGATGGCTCAAGACCCGTCAAGTATGTCCGCTAGATAATAGCGAGTGGGAGTTTCAGAAATATGGTCACTAG 444 0.482 MATIDSDVTMVPAGEPSSSTGPSSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGFRASEGVRMYTAGNKGVMLEERLNAFHLGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00682 147 CDD mRING-H2-C3H2C2D_RBX1 50 140 - -
Vian11g00682 147 SUPERFAMILY RING/U-box 30 84 - -
Vian11g00682 147 SUPERFAMILY RING/U-box 108 144 - -
Vian11g00682 147 FunFam E3 ubiquitin-protein ligase RBX1 19 147 - -
Vian11g00682 147 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 85 IPR013083 -
Vian11g00682 147 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 147 IPR013083 -
Vian11g00682 147 PANTHER RING BOX 31 146 - -
Vian11g00682 147 MobiDBLite consensus disorder prediction 1 28 - -
Vian11g00682 147 Pfam RING-H2 zinc finger domain 109 137 IPR024766 GO:0008270
Vian11g00682 147 Pfam RING-H2 zinc finger domain 50 83 IPR024766 GO:0008270
Vian11g00682 147 MobiDBLite consensus disorder prediction 12 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00682 Vian-Chr11 7218331 7220813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00682 101 141 C3H Transcription Factor Family AT2G42350 43.902 4.89e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00682 K03868 - gmx:100526919 236.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00682 11 7218331 7220813 Vian5g00907 5 30095950 30098561 PCT