Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00679 ATGGAGGTGATGTGGGTCAAAAGTCATGGAAGAATTTTTGTGGGAAGGGTGTTGTTTCTCTTGGTTTTGTTCTTGTGGATTCAGACGCAGGCAGTGGTGGGAAGGACAAGAACTAATGTCACAAACTCTTCTACTTCTTCGACACCGAGAGTTTTCAGAGTTGGAGCACTGTTCAGTCTTGATTCTATAATTGGAAGATCGGCTGAACCTGCAATCGTGGCTGCTTTCGAAGATGTTAATGCTGATTCAAGCATTCTCCCTGGCATTAAACTTGAAGCTGCTTTGCATGATACAAATTGCAGTGGCTTTGCTGGAACAATGGAAGCTTTGCAGTTAATGGAGGATGAAGTGATTGCTGCAATTGGTCCACAGTCCTCAGGAATAGCCCATGTCATCTCTCATGTGGTCAATGAACTCCATGTCCCTCTTATTTCATTTGGGGCAACAGACCCTTCTCTATCTTCCCTTCAGTACCCATATTTTGTTCGCAGCACCCAAAGTGACTATTATCAGATGTATGCAATTGCAGATTTGGTTGATTATTACAGATGGAGGGAGATAATAGCCATTTATGTAGATGATGATAATGGAAGAAATGGAATTTCAGTACTTGGAGATGCTCTAGCAAAAAAGCGTGCCAAGATCTCTTACAAGGCTGCATTCCCTCCTGGAGCACCCAGGAAAGACATCAGTGACTTGTTAAATGGAGTGAACTTAATGGAATCAAGGGTCTTCGTTTTGCACGTTAATCCTGAAACTGGTTTGAGCATTTTTTCTATTGCTCAGAAGCTGGGAATGATGGACAGTGGCTATGTATGGATTGCAACAGATTCGCTTGCTTCAGCACTTGATTCATTAGACCCAATTGATCCTAAGATATTGAATCTCCTACAAGGGGTTTTGGCTTTACGTCATCACACTCCTGATACTAATGAAAAGAAGAATTTTCTTTCCAGAATGAAGAGACTGAGAAACAAGGAGACTCCAAGCTTCAATTCCTATGCAGTGTATGCATATGATACAGTTTGGTTAGTAGCCCGGGCTCTTGATACTTTTTTAAACGAAGGTGGTGTGGTATCTTTCTCCTCTGACCCTAAGTTAAGCGACACAAATGGAAGCACACTGCATTTAGAATCACTTCATGTTTTTGATGAAGGCCCTACTTTTCTGCAGACAGTTTTGGGAACCAATTTCACTGGTCTGACAGGACTAGTTCAGTTTGATAATGAAAGGAATAGAATTCGTCCAGCATATGATATCTTGAACATAGGTGGATCTGGAATGCGCAGAATTGGTTATTGGTCTAATTACTCAGGTCTCTCAGTTGTGGCTCCAGAAATTCTGTATAAGAAGCCACCTAACACTTCAACAAGCAGCCAGCAACTATACGGTGTTATTTGGCCTGGAGAAACTGCAACTAAACCAAGGGGATGGGTGTTTCCCAACAATGGAAAGCCACTGAGAATTGCAGTGCCTAACCGAGTAAGCTACTTAGAGTTTGTTTCTAAAGACAAGAACCCCCCTGGAGTAAGAGGCTATTGCATTGATGTATTTGAAGCTGCCATAAACTTGTTGCCTTATCCTGTCCCGCGACAATACATATTATTTGGACCTGGTGATAGAAATCCTAGCTACGATGACCTTGCAAGTCAAGTTGCACTAAATAACTATGATGCAGCTGTTGGTGATGTTACAATTGTCCCCAACAGGACAAGGTTTTTGGATTTTACACAACCTTACATAGAATCAGGCCTGGTTGTTGTTGTTCCTGTCAAGGAGATCAAATCAAGTCCTTGGTCTTTCCTCAAGCCATTCACTCCTCAAATGTGGTGTGTTACTGGTGCCTTTTTTATCCTTGTGGGAACCGTTGTATGGATTCTTGAGCACCGGCACAATCCGGAGTTCCGTGGTAAACCAAAGAAACAACTCATGACAGTCTTTTGGTTTAGTTTCTCAACAATGTTTTTCTCACACAGAGAGAACACAGTGAGTGGTCTTGGGAGATTGGTTCTAATCATATGGCTTTTTGTGGTGCTAATTATCAATTCAAGCTACACAGCTAGCTTAACATCAATCCTCACAGTGCAGCAACTGTCATCACAGATTGAAGGAATTGACAGCTTGATCTCAAGCAATCAACCCATTGGAATTCAAGAAGGGTCGTTTGCACGAAAGTATTTGACAGAAGAACTCAACATACAACCATCAAGGATAGTTACATTGAAAAATATGGAGGCATACATTGATGCTCTTGAGCGTGGACCAAAAGATGGAGGGGTTGTAGCTGTTGTTGATGAGCTTCCTTATATTGAAATACTAATGTCAAATACCAACTGCAAGTTCAGAACCGTTGGGCAGGAGTTCACTAAAAGTGGTTGGGGATTTGCATTCCAGAGGGACTCTCCCCTTGCTGTTGACATGTCAACTGCCATTCTTCAACTCTCAGAGAATGGTGACCTGCAAAAAATCCATGACAAATGGCTCTTAAAACAGGATTGTTCTACACAAGAAAGTGATGTGGATTTAAACCAACTATCTCTGAGTAGCTTCTGGGGTCTCTTTCTGGTTTGTGGCATTGCATGTTTCCTTGCTTTGACTGCATTCTTCATTAGAGTTCTATTTCAGTACACAAAATTCAGCCCAGAACCTGAGCAACATGACGAGGAAAATTCACCAGACAGGCCTAAAGGTAAAGGACCTTTCGGAACCACTAGTAGCTTCAGAGACTTGATTTATTTTGTGGATAAGAAAGAAAAAGAAATCAAAGAGATACTTAAGCAGAAGAGTAAGAAAAGAAGACGCAGTCTGAGCTCAGATGGCCAATCTTCTTCATCCGCCTAA 2841 0.4178 MEVMWVKSHGRIFVGRVLFLLVLFLWIQTQAVVGRTRTNVTNSSTSSTPRVFRVGALFSLDSIIGRSAEPAIVAAFEDVNADSSILPGIKLEAALHDTNCSGFAGTMEALQLMEDEVIAAIGPQSSGIAHVISHVVNELHVPLISFGATDPSLSSLQYPYFVRSTQSDYYQMYAIADLVDYYRWREIIAIYVDDDNGRNGISVLGDALAKKRAKISYKAAFPPGAPRKDISDLLNGVNLMESRVFVLHVNPETGLSIFSIAQKLGMMDSGYVWIATDSLASALDSLDPIDPKILNLLQGVLALRHHTPDTNEKKNFLSRMKRLRNKETPSFNSYAVYAYDTVWLVARALDTFLNEGGVVSFSSDPKLSDTNGSTLHLESLHVFDEGPTFLQTVLGTNFTGLTGLVQFDNERNRIRPAYDILNIGGSGMRRIGYWSNYSGLSVVAPEILYKKPPNTSTSSQQLYGVIWPGETATKPRGWVFPNNGKPLRIAVPNRVSYLEFVSKDKNPPGVRGYCIDVFEAAINLLPYPVPRQYILFGPGDRNPSYDDLASQVALNNYDAAVGDVTIVPNRTRFLDFTQPYIESGLVVVVPVKEIKSSPWSFLKPFTPQMWCVTGAFFILVGTVVWILEHRHNPEFRGKPKKQLMTVFWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISSNQPIGIQEGSFARKYLTEELNIQPSRIVTLKNMEAYIDALERGPKDGGVVAVVDELPYIEILMSNTNCKFRTVGQEFTKSGWGFAFQRDSPLAVDMSTAILQLSENGDLQKIHDKWLLKQDCSTQESDVDLNQLSLSSFWGLFLVCGIACFLALTAFFIRVLFQYTKFSPEPEQHDEENSPDRPKGKGPFGTTSSFRDLIYFVDKKEKEIKEILKQKSKKRRRSLSSDGQSSSSA 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00679 946 FunFam Glutamate receptor 598 728 - -
Vian11g00679 946 Pfam Ligand-gated ion channel 830 861 IPR001320 GO:0015276|GO:0016020
Vian11g00679 946 SUPERFAMILY Periplasmic binding protein-like I 47 479 IPR028082 -
Vian11g00679 946 Gene3D - 598 718 - -
Vian11g00679 946 FunFam Glutamate receptor 167 325 - -
Vian11g00679 946 Gene3D - 482 597 - -
Vian11g00679 946 Coils Coil 914 934 - -
Vian11g00679 946 CDD PBP1_GABAb_receptor_plant 53 444 IPR044440 -
Vian11g00679 946 Gene3D - 70 415 - -
Vian11g00679 946 SMART GluR_14 488 830 IPR001320 GO:0015276|GO:0016020
Vian11g00679 946 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 125 153 - -
Vian11g00679 946 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 338 350 - -
Vian11g00679 946 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 65 81 - -
Vian11g00679 946 Pfam Receptor family ligand binding region 69 424 IPR001828 -
Vian11g00679 946 Pfam Bacterial extracellular solute-binding proteins, family 3 544 829 IPR001638 -
Vian11g00679 946 MobiDBLite consensus disorder prediction 925 946 - -
Vian11g00679 946 CDD GluR_Plant 485 828 - -
Vian11g00679 946 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 54 891 IPR015683 -
Vian11g00679 946 SUPERFAMILY Periplasmic binding protein-like II 463 829 - -
Vian11g00679 946 FunFam Glutamate receptor 482 598 - -
Vian11g00679 946 FunFam Glutamate receptor 724 832 - -
Vian11g00679 946 Gene3D - 719 832 - -
Vian11g00679 946 Gene3D - 167 440 - -
Vian11g00679 946 MobiDBLite consensus disorder prediction 882 905 - -
Vian11g00679 946 PIRSF IGluLR_plant 12 946 IPR017103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00679 Vian-Chr11 7162580 7166677 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00679 49 795 Ion Channels AT1G05200 68.675 0.0 1110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00679 K05387 - gmx:100799912 1634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00679 11 7162580 7166677 Vian11g00679 11 7162580 7166677 ECH
Vian11g00679 11 7162580 7166677 Vian5g00912 5 30165969 30170147 PCT