Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00678 ATGAAGAAATTCATGGTTTTGCACCTTGTGACATGGATTTGGATATGTGGTGTTGCTCACTGCACAACGCCTGCCAGTGTGAACATTGGTGCGGTTTTTGCTTTCGATTCGGTCATAGGTAGAGTTGCGAAGGAAGCTATGGAAATGGCCGTTTCTGATGTCAAAGAGGACCCCACAGTTCTTAACGGAACTGAACTCAACTTGATAATGAAGGATGCCATGTGCAATGCTTTTCTGGGATCAATTGGAGCTTTTCAGGTACTTGAGAAAGGGGTTGCAGCCATCATTGGTCCCCAGTCATCCGCTGTAGCTCACACGATTTCTCAAATTGCTGATGCTCTCCAAGTTCCTCTTGTTTCATATGCTGCCACTGATCCAACCTTGTCCTCCCTCCAGTTTCCTTTCTTTATTCGTTCTACGCAAAGTGACTTGGCACAAATGACTGCAATGGCTGATCTTATTGACTTTAATGGATGGAAAGAGGTCATTGTTGTATTCTTAGACGATGATTATGGAAGAAATGGAGTATCTGCTTTGAGTGATGAACTTGAAAAAAGGAGATTGAAAATTTCTTATAAACTTCCTTTGAGTATTAAGTTTGATCCGGATGAAATCACCACCTTACTCAATCAATCTAAATTGTTTGGTCCTCGTGTGTATGTTATTCATGCCAACCCTGATCCGAGCTTGAGAATTTTTTCTATTGCTCATAAACTTCAAATGATGGCCAAGGATTACGTGTGGCTTGTCACGGATTGGCTCTCAGCTACACTAGATTCATTATCCCCAGTGAATCGAACCTCTTTCAGTGTTCTCCAAGGGGTTGTTGGTCTTCGTCAACACATTTTGGATTCCCGAAAAAAGAGAGATTTTGTTTCTCGGTGGATGAAAAGGCAAAAAGATGGATTGACAAATACTAGTCTGAACTCCTATGGATTTTCTGCTTATGACACGGTTTGGGCAATTGCACTTTCAATTGATAAATTCCTCAAAGTAAATAATTTTACCTTCATGCTTCATGATAACTATAAGCTATCTCATACAGAAGGAATTGGCGTTCAGCTTGACAAACTCAAAGTCTTCACTGGTGGATCTGATCTGGTCAAGATATTATTACAATCAAATTTTACTGGTGTGAGTGGTCAAGTTCTGTTTAATTCTGACAGAAATATTGTGAGTGGTGGTTATGATATTATCAATATCAATCAGTTGGGAATTTCTAGGGTTGGTTTTTGGTCTAATAATTCTGGATTTTCAGTTGTACCCCCTGAGACTCTTAAAAAAAGGGCACACAGCAGGTTTTCCAAAGATCAGAAGCTTGACAACATTACTTGGCCTGGTGGAAAGACAGATCGACCACGTGGCTGGGTGATTGCTGACAATACCAAGCCACTGAGAATTGGAGTGCCAAAAAGAGCAAGTTTTGTTGAATTTGTAACTGAAGTGCCAACTAGTCATGAAATTCGGGGGTATTGCATCGATGTGTTCAAGAAAGCCCTAGAATTTATTCCATATGAAGTTCCCTATGTATTCAAGCCTTTCGGCAATGGTAAAGCAAATCCCAATTATGACGAACTTGTGAAAATGGTTGCTGATAATGTATATGATGCTGTTGTTGGAGACATTGCAATTGTGACAAACCGTACAAGGATTGTGGATTTTTCTCAGCCTTTTGCATCATCTAGCCTTGTCATAGTGGCTCCTATCAACAAATCAGGATCAAGTGCTTGGGTGTTCCTCAAACCATTTACAGCAGATATGTGGTGTGCTACGGCTGCCTCATTTTTGGTGATTGGAACTGTTATATGGATTCTTGAGCACCGAGTCAATAATGACTTCCGTGGTCCTCCTAAGAAGCAAATTGTAACAATGTTAATGTTCAGTCTCTCAACCCTGTTTAAGAAAAATCAGGAAGATACCGTAAGCTCCCTTTCTAAAATGGTGATGATAGTCTGGCTTTTTCTGTTGATGGTGATCACGGCTAGCTATACAGCAAGCTTGACTTCAATTCTTACAGTGGAGCAGCTTTCATCGCCCATCACAGGAATCGAGAGCTTGATTGCAAGTAGCTGGCCTATAGGGTACCAAGTGGGGTCATTTGCTTACAGCTATCTGGCAGATAATCTTTATATTTCAAAATCAAGGCTTGTTTCATTAGGCTCCCCTGAGGAATATGCTTTAGCACTGCAGAAGGGACCTTCTGATGGAGGGGTGGGAGCTATTGTAGATGAGCTTCCGTATGTTGAGTTATTTCTGTCAAAAGAAACTGATTTTGGTATCATTGGACAGCCATTCGCAAGAAACAGTTGGGGATTTGCTTTTCAAAGAGAATCTCCTTTTGCCTTTGACATGTCTACAGCAATTTTGAGACTTTCTGAGAATGGGGATCTTCATAGGATACAGGAGAGGTGGTTCTGTAAAATGGGCTGTCCTGAAGAAAGGACAAGCAACTCCAAGCCTGACCAGCTTCACTTGATTAGCTTTTGGGGCCTGTATCTTTCATGTGGTGTTGTCTCTCTTGCTGCACTCGTTTTGTTTCTGCTGCGAATGATTCGACAATACGCCCGCTTCAAAAAAAAGAAAAAGGATATTGCTTCTTCGTCCTCAGAACAACCATCAGGCAGTCACTGTTCCCAGGTTGTTGTTAACTTCTTTAACTTCATTGATGAGAAGGAAGAGGCCATCAAGAAAATGTTCGCTCCATCTGACAATCATCACAACCCCAACTGA 2730 0.4128 MKKFMVLHLVTWIWICGVAHCTTPASVNIGAVFAFDSVIGRVAKEAMEMAVSDVKEDPTVLNGTELNLIMKDAMCNAFLGSIGAFQVLEKGVAAIIGPQSSAVAHTISQIADALQVPLVSYAATDPTLSSLQFPFFIRSTQSDLAQMTAMADLIDFNGWKEVIVVFLDDDYGRNGVSALSDELEKRRLKISYKLPLSIKFDPDEITTLLNQSKLFGPRVYVIHANPDPSLRIFSIAHKLQMMAKDYVWLVTDWLSATLDSLSPVNRTSFSVLQGVVGLRQHILDSRKKRDFVSRWMKRQKDGLTNTSLNSYGFSAYDTVWAIALSIDKFLKVNNFTFMLHDNYKLSHTEGIGVQLDKLKVFTGGSDLVKILLQSNFTGVSGQVLFNSDRNIVSGGYDIININQLGISRVGFWSNNSGFSVVPPETLKKRAHSRFSKDQKLDNITWPGGKTDRPRGWVIADNTKPLRIGVPKRASFVEFVTEVPTSHEIRGYCIDVFKKALEFIPYEVPYVFKPFGNGKANPNYDELVKMVADNVYDAVVGDIAIVTNRTRIVDFSQPFASSSLVIVAPINKSGSSAWVFLKPFTADMWCATAASFLVIGTVIWILEHRVNNDFRGPPKKQIVTMLMFSLSTLFKKNQEDTVSSLSKMVMIVWLFLLMVITASYTASLTSILTVEQLSSPITGIESLIASSWPIGYQVGSFAYSYLADNLYISKSRLVSLGSPEEYALALQKGPSDGGVGAIVDELPYVELFLSKETDFGIIGQPFARNSWGFAFQRESPFAFDMSTAILRLSENGDLHRIQERWFCKMGCPEERTSNSKPDQLHLISFWGLYLSCGVVSLAALVLFLLRMIRQYARFKKKKKDIASSSSEQPSGSHCSQVVVNFFNFIDEKEEAIKKMFAPSDNHHNPN 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00678 909 Pfam Bacterial extracellular solute-binding proteins, family 3 466 805 IPR001638 -
Vian11g00678 909 PIRSF IGluLR_plant 1 909 IPR017103 -
Vian11g00678 909 Gene3D - 576 704 - -
Vian11g00678 909 FunFam Glutamate receptor 702 809 - -
Vian11g00678 909 CDD GluR_Plant 463 805 - -
Vian11g00678 909 Gene3D - 142 418 - -
Vian11g00678 909 Gene3D - 740 770 - -
Vian11g00678 909 Gene3D - 771 805 - -
Vian11g00678 909 FunFam Glutamate receptor 142 299 - -
Vian11g00678 909 Gene3D - 462 575 - -
Vian11g00678 909 SMART GluR_14 466 807 IPR001320 GO:0015276|GO:0016020
Vian11g00678 909 Gene3D - 45 393 - -
Vian11g00678 909 Pfam Ligand-gated ion channel 806 837 IPR001320 GO:0015276|GO:0016020
Vian11g00678 909 CDD PBP1_GABAb_receptor_plant 28 422 IPR044440 -
Vian11g00678 909 Pfam Receptor family ligand binding region 44 402 IPR001828 -
Vian11g00678 909 SUPERFAMILY Periplasmic binding protein-like I 22 456 IPR028082 -
Vian11g00678 909 FunFam Glutamate receptor 460 576 - -
Vian11g00678 909 FunFam Glutamate receptor 576 714 - -
Vian11g00678 909 SUPERFAMILY Periplasmic binding protein-like II 444 805 - -
Vian11g00678 909 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 27 865 IPR015683 -
Vian11g00678 909 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 40 56 - -
Vian11g00678 909 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 231 254 - -
Vian11g00678 909 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 100 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00678 Vian-Chr11 7153021 7157895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00678 21 907 Ion Channels AT2G32400 56.633 0.0 1031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00678 K05387 - gmx:100784247 1574.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00678 11 7153021 7157895 Vian11g00678 11 7153021 7157895 ECH
Vian5g00912 5 30165969 30170147 Vian11g00678 11 7153021 7157895 PCT