Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00674 ATGAAACTTCTTCAAGACACCTTTTTCTCATTTTTCGTCATTTCCACTGTGGCGTCTTCTAACTTACAACCAGATGTTGGACTTATACAGTATTCACGGACTCATGATTTCTTTTTCTCCGTCGCGGACGGCCGCGAAGACCTCGACGAAGCCGCGACAGACGGCAAGACATTCGATGACCTCGGCCTGGCAGAGTGGGTCGTTAGTACGTGTCGGGAGCTCGGAATGCGGATGCCACGACACGTGCAGCAGCGTTGCATACCGCCTGTGCTCGAGGGCCGGCACGTGCTTGGCATCGACGAGACTGGGAGCGGGAAAACGGCGGCCTTCGCTCTTCCGATCCTGCATCGACTCGCTGAGCACCCCTTCGGCGTTTTCGCACTCGTAGTGACGCCCACGCGCGAACTGGCGTTCCAGCTGGCGGAGCAGTTCCGCGTTCTGGGCTCTGCCGTGCACCTCCGCATCACGGTTGTGGTAGGCGGCATGGATATGCTCAAGCAGGCGAAGGATTTGGTTGTGAGGCCGCATCTCGTCATTGCCACACCTGGTAGAATCCACGTCTTGCTCCGTGATAATCCTGATATTTCTCCTGTTTTCTCCAGAACCAAGTTTCTTGTCTTGGATGAAGCAGATCGAGTTCTGGATGCTTGTTTTCAGGAGGAATTGAAATTTATCTTTCAGTGCTTACCTGAAAATCGACAAAATCTGTTCTTTTCTGCGACAACTACAAGTAATCTGCAAAAGTTGCAAGAACGTTACCAAGATAAGATGTATGTCTACGAGGCATATGAAGGTTTTAAAACAGTTGAATCACTTAAGCAACAGGTGATATTCATCCCTAAAAAGGTGAAGGATGTATATTTGATGTATATCTTGTCAAAAATGGAGGATATGGGAATTCGGTCTGCCATCGTGTTTATCTCAACATGCAGAGATTGTCATCGTTTAAGTTTAATGCTGGAAGTTCTTGATCAAGAAGCAGCAGCTCTTTATTCATTCAAATCACAAACTCAGAGGCTTGAAGCTCTTCATCAATTTAAATCAGGAAAGGTTTCTGTACTGCTAGCAACTGATGTTGCCAGTCGTGGATTGGATATTCCTACAGTTGACCTTGTTATCAACTATGATGTTCCAAGGTTTCCACGGGATTATATTCATCGGGTTGGTCGAACGGCAAGAGCCGGTAGAGGTGGACTGGCTTTGAGCCTTGTCACCCAGAATGATGTTGAACTTATTCATGAAATAGAAGCACTTATTGAGAAACAACTTGAAATGATTGAATACAAAGAAAGTGAGGCGCTTTCTCTCATGAAGAAGGTTTTCAGTGCTAAGAATGTAGCAGAAATGAGAATGATAGATGATGGCTTTGAGGAGAAAGCTAAAGAGCGGAAAAAACAGAAACTGAAAATGCTTGCAGAGAAAGGACTCTTGAAGAAAAATAAAAGGAGAAAAAAAAATTTTGGGAGGATGAGGTGA 1476 0.4566 MKLLQDTFFSFFVISTVASSNLQPDVGLIQYSRTHDFFFSVADGREDLDEAATDGKTFDDLGLAEWVVSTCRELGMRMPRHVQQRCIPPVLEGRHVLGIDETGSGKTAAFALPILHRLAEHPFGVFALVVTPTRELAFQLAEQFRVLGSAVHLRITVVVGGMDMLKQAKDLVVRPHLVIATPGRIHVLLRDNPDISPVFSRTKFLVLDEADRVLDACFQEELKFIFQCLPENRQNLFFSATTTSNLQKLQERYQDKMYVYEAYEGFKTVESLKQQVIFIPKKVKDVYLMYILSKMEDMGIRSAIVFISTCRDCHRLSLMLEVLDQEAAALYSFKSQTQRLEALHQFKSGKVSVLLATDVASRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVELIHEIEALIEKQLEMIEYKESEALSLMKKVFSAKNVAEMRMIDDGFEEKAKERKKQKLKMLAEKGLLKKNKRRKKNFGRMR 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00674 491 Pfam Helicase conserved C-terminal domain 299 395 IPR001650 -
Vian11g00674 491 Gene3D - 267 440 IPR027417 -
Vian11g00674 491 SMART ultradead3 75 275 IPR014001 -
Vian11g00674 491 CDD DEADc_DDX49 58 261 - -
Vian11g00674 491 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 271 434 IPR001650 -
Vian11g00674 491 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 87 260 IPR014001 -
Vian11g00674 491 MobiDBLite consensus disorder prediction 472 491 - -
Vian11g00674 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 415 IPR027417 -
Vian11g00674 491 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 56 84 IPR014014 GO:0003724
Vian11g00674 491 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 55 479 - -
Vian11g00674 491 CDD SF2_C_DEAD 272 404 - -
Vian11g00674 491 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 206 214 IPR000629 -
Vian11g00674 491 SMART helicmild6 314 395 IPR001650 -
Vian11g00674 491 MobiDBLite consensus disorder prediction 476 491 - -
Vian11g00674 491 Gene3D - 46 260 IPR027417 -
Vian11g00674 491 Pfam DEAD/DEAH box helicase 81 249 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00674 Vian-Chr11 7077912 7089427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00674 56 412 Eukaryotic Initiation Factors Gene Family AT3G13920 31.933 1.78e-54 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00674 K14778 - gmx:100798597 743.036