Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00672 ATGGATCTGCTTCTTCTCCATCCCCAATCTACACCTTCCAATTTTCTTCCTCCAAGAGCTGTATTGAGAGGAAACCTCCGGATGGCATCAATGGCTGCCATAGGGGCTCGTTGTTTTCTGATTGCAGGTTGTGAAATGACGATGGATAAGAATCCCGACAGCGATGCGGCGGAGGAGCGGTACCGCATGAGCGACACGTTGCAGAATGAAGGAGGAGGCCACTCCCTTTGCTTGGGGTTTGAAACCTTTGGGTTTTGCAGAAGTTTTGCCACCACCCATTCGATTGTGCTTGTTGTCGTGTCTGTCCCTGTAGTGAACATTTCAAAGATAATAACGTTAATAGTTTTTGGATTTGATGAGCGTGTTCTCATAGCCATGCAGGGAGGCACAAACGAAGGGGAGGCCAGATATGACCTTGACAGCGGAGGGGAGGCCAGATATGACCTTAACGTGGAGCCTGGATGTGGTGGCGAGGAAGGAGAAGCACTGGCCCGGGCCGATGAGGTTCATGGGAAGAAACAAAGCGCTGACGATGCTGCAAAATCCAAGACGACAAAATGGGTGATGGTGGATGGTAACCCCACTTGTTCCGTTTGTGGAAAGACCTTTTCTTCCAAGAAGTCCTTGTTTGGGCACATGAGGTCTCACACTGAGAAGGCGACGAAGGGAATTCAAAGCAACGCTCCGATCGTTGGTGCCTCCTCCAATTCCACTTCTTCCTCAACCCTTTCTGATGATTTGGCCGTTGATCTCTCTCGAGTTCTCAGGGGTTGGTCCATTACTGCCAAGAGGGGTCGCATAAGCTCTTGCAGCAAATTGGATTCTGGTTTGGAAGAAGGTGATAAGATTGAGCCACGAATGCAAGAGGCTGCATATGAGCTCATGTTGCTGGCCAGAGGGAGTCCAAAGTGCGAGCAAGAGGTTGGCGCTTATCAAATTCAAGAACATCCATTCAACACGAGGATGATGAAGAAGCTCTTGTCTAAGAAGTTTCGTGCACCCAAGGAAAAAAACATGATAAGGGGAATATGCAAATTGAGTATGAATCAGTTAGTGAAGTTTCAAATGATGTGGAAGATGATAAGTTACCTGATTTAG 1098 0.4809 MDLLLLHPQSTPSNFLPPRAVLRGNLRMASMAAIGARCFLIAGCEMTMDKNPDSDAAEERYRMSDTLQNEGGGHSLCLGFETFGFCRSFATTHSIVLVVVSVPVVNISKIITLIVFGFDERVLIAMQGGTNEGEARYDLDSGGEARYDLNVEPGCGGEEGEALARADEVHGKKQSADDAAKSKTTKWVMVDGNPTCSVCGKTFSSKKSLFGHMRSHTEKATKGIQSNAPIVGASSNSTSSSTLSDDLAVDLSRVLRGWSITAKRGRISSCSKLDSGLEEGDKIEPRMQEAAYELMLLARGSPKCEQEVGAYQIQEHPFNTRMMKKLLSKKFRAPKEKNMIRGICKLSMNQLVKFQMMWKMISYLI 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00672 365 SMART c2h2final6 194 216 IPR013087 -
Vian11g00672 365 Pfam C2H2-type zinc finger 196 217 - -
Vian11g00672 365 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 167 330 - -
Vian11g00672 365 SUPERFAMILY beta-beta-alpha zinc fingers 195 219 IPR036236 -
Vian11g00672 365 Gene3D Classic Zinc Finger 195 247 - -
Vian11g00672 365 ProSitePatterns Zinc finger C2H2 type domain signature. 196 216 IPR013087 -
Vian11g00672 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 194 221 IPR013087 -
Vian11g00672 365 MobiDBLite consensus disorder prediction 220 242 - -
Vian11g00672 365 FunFam Zinc finger protein 194 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00672 Vian-Chr11 7035639 7037287 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00672 190 229 C2H2 Transcription Factor Family AT2G26940 47.500 2.15e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian11g00672 zf-C2H2_6 5.6e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00672 - - vra:106765955 261.151