Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00665 ATGGAGTGGACTAGAGGCTTCATCATAGGACGTGGCTCGTCAGCCACCGTCTACACCGCCACCTCCGCCCACTCCTCCACCGTTGCCGCTGTCAAGACTGCAGAGTTATCCCCGTCAAACTCAGAAAAGTTGCAGAGAGAACAGAGGATTCTGTCTTCTCTGTTTTCTCCCCAAGTAGTTGCCTACAAAGGTTGTAACACTACAGAGGAAAACAACACCCTGTGGTTCAACCTCTTCATGGAGTACATGCCCTTTGGAACTCTCTCTCAGGAAATTCGCCGGCACGGTGGTCGGCTCAGCGAGCCGACCATCGTGAACTACGTTCGACAAGTCCTGCAGGGGCTGGAGTACTTGCACAATAAGGGTGTTGTGCATTGTGATATTAAAGGTAGCAACATTTTGATTGGGGAAGATGGGGCCAAGATTGGGGATTTTGGGTGTGCTAAGTTGTGGAATGAGTCTCCGGTGGCGGCGATCGGGGGCACGCCAATGTTCATGGCCCCAGAGGTGGCGCGTGGGGAGGAGCAAGGGTACCCTGCTGATGTATGGGCGCTTGGATGCACTGTGGTTGAAATGGCCACTGGGTTTGCTCCGTGGCCTAATTTAGAAGACCCTGTAACTGTGTTGTACCGCGTTGCATATTCCAATGAAGTTCCTGAGATTCCAAGTTTTCTGTCTGAAGAAGCAAAGGATTTCTTGGGGAAGTGTTTCAGGAGGAATCCTAAAGAGAGGTGGAATTGTAGTGAGCTTCTGAAGCATCCTTTTGTTGGGGAATTGAGTTCCAACGACAAGGATATTGAACAATCTAATTCATGTTCTCCAACAAGTATTCTTGAGCAGAGCTTTTGGAATTCTGTGGAAGAGGCAGAGTGTGTTTCTGACCCTGGCAATGTGATTCAAATTAAAAGCTCTGATGAGTCTCCGAAGGGTAGGATCAGAAGGCTAGCTTTGTGTTCGGGGGATCCAATTTGGGAATTGGATGATGAAAATTGGATCACAACGAGGGGCAGTGAAGCAGGGGCTTCAAGTTGTGAAGGGTTGGATTTGGATGTTGTTAATATTAGAATTAGTGATTATTTTTGTGATGATTATTATAAAAGTAGTGATGTTAGCGTTGAAGTTGGTAGTTTCAATTTTGAGGGAGGCGTTGATGAGATGGTTATCCCTTCAACATTTGAGTTTTTATAA 1188 0.4705 MEWTRGFIIGRGSSATVYTATSAHSSTVAAVKTAELSPSNSEKLQREQRILSSLFSPQVVAYKGCNTTEENNTLWFNLFMEYMPFGTLSQEIRRHGGRLSEPTIVNYVRQVLQGLEYLHNKGVVHCDIKGSNILIGEDGAKIGDFGCAKLWNESPVAAIGGTPMFMAPEVARGEEQGYPADVWALGCTVVEMATGFAPWPNLEDPVTVLYRVAYSNEVPEIPSFLSEEAKDFLGKCFRRNPKERWNCSELLKHPFVGELSSNDKDIEQSNSCSPTSILEQSFWNSVEEAECVSDPGNVIQIKSSDESPKGRIRRLALCSGDPIWELDDENWITTRGSEAGASSCEGLDLDVVNIRISDYFCDDYYKSSDVSVEVGSFNFEGGVDEMVIPSTFEFL 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00665 395 FunFam Mitogen-activated protein kinase kinase kinase 17 2 311 - -
Vian11g00665 395 SUPERFAMILY Protein kinase-like (PK-like) 4 280 IPR011009 -
Vian11g00665 395 Pfam Protein kinase domain 8 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g00665 395 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 290 - -
Vian11g00665 395 Gene3D Transferase(Phosphotransferase) domain 1 2 306 - -
Vian11g00665 395 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Vian11g00665 395 SMART serkin_6 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g00665 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Vian11g00665 395 CDD STKc_MAPKKK 2 256 - -
Vian11g00665 395 ProSiteProfiles Protein kinase domain profile. 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00665 Vian-Chr11 6950448 6951635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00665 3 336 MAP Kinase Kinase Kinase AT5G55090 49.425 1.50e-106 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vian11g00665 Pkinase 9.5e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00665 K20716 - gmx:100797801 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00665 11 6950448 6951635 Vian6g01410 6 31646099 31647911 ECH
Vian11g00665 11 6950448 6951635 Vian11g00665 11 6950448 6951635 ECH
Vian11g00665 11 6950448 6951635 Vian5g00947 5 30705439 30706506 PCT