Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00663 ATGGCAAGAGGGGGTGGACTCTCCATTGATTCAGATCCAATTGGGAGCCTCTTCCCCCACAACCCAGTAGTTCTCAACTCTTTTCCCGAAGACAGTAACAATAACAACAACAACACCATCAGTGGCCAACAAAAGTGGAAACTTGGTCCCAACATGGATGCCACAGTTAGCAGAAACAGGTCTCCATCATCTTCTCCAAACACCAACCCCACCTCCACCTCCACCTCCACCTCCACCTCCACCATCCCCTTCCAAGTCAACCTTACCTCTGATAACAAAAGGCCCCACATCGACGAGATGGACTTCTTCCCTAACAAGACCGATGATGATGATCGTATAAACGCATTAAAAAACTTTGCCTCTGCCTCCACCTCTGCACCTCCCTCACTAGACCACCTTCTTCACACACATGATCATTCATCCACTCCTGCTATCTTGGAATTGAAAGTAAACACTGGTTTGAATCTTCTTACCACCAACACTGCTAGTGATCATTCCATGGTGGACGATGAGACGTCGACGAATTCCGAAGAAAAAAGAGCCAAGAGTGAGATGGTTGTTCTCCAAGCTGAGCTTGAGAGAATGAAGGTGGAGAATCATAGGCTGAGGAACATGCTTGATCAGGTTAACACCAATTACAATGCCTTGCACATGCATTTGGTAAGTATTATGCAAGAACAGAAGGAGGAGGAGGGTGAACAACAAGTGTTTGATGGAAAATTAGATGAGGAAAAACAAAGTGGGAATGGGGTCTTGGTGCCAAGACAATTTATGGATCTTGGGTTGGCTAGTAATGTTGATACTAATGAACCTTCTCATTCTTCCTCAGTGGGAAGAAGTCAGGATCTGTCAAAGTCGCCAATAAACAATGAGGTAGCATCCAAGGAATTTGACACCAAGAAGAATGGGAGTGCTAGTGATGAAGGATTTGATCAAGACAAGAAGGAATTTGGAAGGGGAATTGAAAGGGAAGACAGTCCCTCAGAAGGGGTTGCCCCTAATAGCAATGTTCCAAAGTTTAGTCCTCCACGAAACGTTGATCAAGCTGAGGCTACCATGAGAAAGGCACGGGTTTCTGTCAGAGCTCGATCAGAGGCACCCATGATCACTGATGGGTGCCAATGGAGAAAGTATGGGCAGAAGATGGCCAAAGGAAACCCATGTCCTCGAGCATATTATAGATGTACCATGGCAGCAGGTTGCCCAGTGAGAAAACAGGTGCAAAGGTGTGCTGATGACCGATCAATACTGATCACAACATATGAAGGGAATCACAACCACCCTTTGCCTCCAGCAGCTATTGCAATGGCACAAACAACTTCTGCAGCAGCTAGAATGCTGCTATCAGGATCTATGTCAAGTGCCGATGGCCTAATGAATGGAAACTTCCTCACAAGGACACTCCTCCCTTGCTCTTCTAGCATGGCCACTATCTCTGCATCAGCACCCTTCCCAACTGTTACATTGGATTTGACTCAGTCTCCAAACCCACTACAGTTCCCAAAGCCACCAAACCAATTCCAAATCCCTTTCCCTGGTGTCCCTCAGAACTTTGCCAATTCCTCAGCCTCATTGCTGCCTCAGATATTTGGGCAGGCACTGTATAACCAGTCCAAGTTTTCTGGCCTCCAAATGTCTCAAGATGCAGACACTTCCCAGTTGAGTAACCAATCTCAACGGCCACCGCCGCACCTTGCTGACACGGTCAGTGCTGCCACTGCTGCCATTGCAGCTGACCCCAACTTCACGGCAGCTTTGGCAGCAGCCATCACTTCTATCATTGGGGGTGCACAGCCAAACAACAACACCAGTATTAATAACAATGGCGCCACATCCAACAACACCAGCAATGCCAATATTACATCAAACAACAACAAATAA 1881 0.4694 MARGGGLSIDSDPIGSLFPHNPVVLNSFPEDSNNNNNNTISGQQKWKLGPNMDATVSRNRSPSSSPNTNPTSTSTSTSTSTIPFQVNLTSDNKRPHIDEMDFFPNKTDDDDRINALKNFASASTSAPPSLDHLLHTHDHSSTPAILELKVNTGLNLLTTNTASDHSMVDDETSTNSEEKRAKSEMVVLQAELERMKVENHRLRNMLDQVNTNYNALHMHLVSIMQEQKEEEGEQQVFDGKLDEEKQSGNGVLVPRQFMDLGLASNVDTNEPSHSSSVGRSQDLSKSPINNEVASKEFDTKKNGSASDEGFDQDKKEFGRGIEREDSPSEGVAPNSNVPKFSPPRNVDQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCADDRSILITTYEGNHNHPLPPAAIAMAQTTSAAARMLLSGSMSSADGLMNGNFLTRTLLPCSSSMATISASAPFPTVTLDLTQSPNPLQFPKPPNQFQIPFPGVPQNFANSSASLLPQIFGQALYNQSKFSGLQMSQDADTSQLSNQSQRPPPHLADTVSAATAAIAADPNFTAALAAAITSIIGGAQPNNNTSINNNGATSNNTSNANITSNNNK 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00663 626 MobiDBLite consensus disorder prediction 25 83 - -
Vian11g00663 626 ProSiteProfiles WRKY domain profile. 364 430 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian11g00663 626 Gene3D WRKY domain 354 431 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian11g00663 626 Coils Coil 178 212 - -
Vian11g00663 626 MobiDBLite consensus disorder prediction 546 564 - -
Vian11g00663 626 MobiDBLite consensus disorder prediction 294 326 - -
Vian11g00663 626 MobiDBLite consensus disorder prediction 546 567 - -
Vian11g00663 626 SUPERFAMILY WRKY DNA-binding domain 362 430 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vian11g00663 626 MobiDBLite consensus disorder prediction 264 293 - -
Vian11g00663 626 FunFam probable WRKY transcription factor 31 354 431 - -
Vian11g00663 626 MobiDBLite consensus disorder prediction 605 626 - -
Vian11g00663 626 SMART WRKY_cls 369 429 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian11g00663 626 MobiDBLite consensus disorder prediction 26 83 - -
Vian11g00663 626 Pfam WRKY DNA -binding domain 371 428 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vian11g00663 626 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 156 606 IPR044810 GO:0003700
Vian11g00663 626 MobiDBLite consensus disorder prediction 264 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00663 Vian-Chr11 6927252 6929912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00663 84 608 WRKY Transcription Factor Family AT1G62300 49.077 2.65e-135 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vian11g00663 WRKY 1.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00663 - - gmx:100127384 843.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00663 11 6927252 6929912 Vian6g01407 6 31615687 31618035 ECH
Vian11g00663 11 6927252 6929912 Vian11g00663 11 6927252 6929912 ECH
Vian11g00663 11 6927252 6929912 Vian5g00948 5 30736068 30738553 PCT