Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00651 ATGGAGGGTGCTGGGATGGAAGGGAATAATATCAGTGATGACAGTAATAAGTCTGAGGCGCATTTGACTTCCGCCGCTGCTTTTGTGGAGGGTGGAATTCAGGACGCTTGTGATGATGCCTGCAGCATATGCCTTGAAGCCTTCTGTGACAGTGATCCTTCCACGGTTACCAGTTGCAAGCATGAGTTTCATCTTCAGTGCATTCTCGAATGGTGTCAAAGAAGCTCCCAGTGCCCCATGTGTTGGCAACCTATCAGTCTCAAAGATCCAACAAGCCAAGAATTACTTGAGGCAGTGGAAAGAGAGCGAAACTTTAGGATCAATCCACCTAGAAATGCCACAATATTTCATCATCCAACACTGGGGGATTTTGAGTTACAACATTTGCCAGTTGGAGCTAGTGATGCTGATCTTGAAGAGCGTATAATCCAACACTTAGCTGCGGCAGCAGCAATGGGAAGAGCACGCCACATTGCTAGAAGGGAAGGGCAGAGAAACAGGTCATCAGCTCAAGGTCGCCCACACTTTTTAGTTTTTTCTACTCATCCTAATTCGCCTCCCATGGCTCCTACTTCTTCCTCTCCATCTCAGAGGGGAGATGATGAAGCAACTCCTACTATTGCTGTTGCCAATCTGTCTCCATCTCCTGCAACAGGAGAACAATCATCACAACTGACTTTAGTTGCTCCTGTTCAAGCAGAGCAGGTCTCTGCTTCAGGATCTGGATCTAGTGCTCTTGGTACAGAACATCAGGGATCATCGTACAACAATAGGAGATCTCCTAATCAGTCATCTCCAAGTAGTCAAGACAGAGCAGGCCCATCAGAATTGCAGTCATTTTCAGAGTCTCTGAAATCTAAACTGAATGCTGTGTCATCAAGGTACAAGGAGTCAATTTCCAAGAGTACCCGAGGGTGGAAGGAGAGATGGTTTTCTCGTAACAATGCTATGTCTGATATTGGATCTGATGTTAGGCGAGAAGTTAATGCAGGGATTGCAACTGTGTCCCGCATGATGGAACGGCTGGAGACCAGAGACAGTAATAGAAGCAATATTAATTCAGCTCCAAGTAATTTAGAGGATGATTCAGTTCAAGGACCTAATGATCAGGCTTTAACTGGCACTGAACGTCTTTTGGGAGACAATAACACAAAAGCTTCTTGTGCTGCAGGTTCTAGTTCGAGTTAA 1188 0.4562 MEGAGMEGNNISDDSNKSEAHLTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEAVERERNFRINPPRNATIFHHPTLGDFELQHLPVGASDADLEERIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPHFLVFSTHPNSPPMAPTSSSPSQRGDDEATPTIAVANLSPSPATGEQSSQLTLVAPVQAEQVSASGSGSSALGTEHQGSSYNNRRSPNQSSPSSQDRAGPSELQSFSESLKSKLNAVSSRYKESISKSTRGWKERWFSRNNAMSDIGSDVRREVNAGIATVSRMMERLETRDSNRSNINSAPSNLEDDSVQGPNDQALTGTERLLGDNNTKASCAAGSSSS 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00651 395 MobiDBLite consensus disorder prediction 236 283 - -
Vian11g00651 395 MobiDBLite consensus disorder prediction 157 202 - -
Vian11g00651 395 MobiDBLite consensus disorder prediction 341 395 - -
Vian11g00651 395 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 18 90 - -
Vian11g00651 395 ProSiteProfiles Zinc finger RING-type profile. 41 81 IPR001841 -
Vian11g00651 395 FunFam E3 ubiquitin-protein ligase RHF2A 12 115 - -
Vian11g00651 395 SUPERFAMILY RING/U-box 34 89 - -
Vian11g00651 395 CDD RING-H2_RHF2A 28 90 - -
Vian11g00651 395 Pfam Ring finger domain 40 81 IPR001841 -
Vian11g00651 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 90 IPR013083 -
Vian11g00651 395 MobiDBLite consensus disorder prediction 184 201 - -
Vian11g00651 395 SMART ring_2 41 81 IPR001841 -
Vian11g00651 395 MobiDBLite consensus disorder prediction 348 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00651 Vian-Chr11 6760883 6763950 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00651 38 81 C3H Transcription Factor Family AT5G15790 50.000 4.97e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00651 K19043 - gmx:100814908 673.315