Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00650 ATGGGTCGCCGCATCTATGGCGTCTCCGACCTCCGTGTCTTCTACACCGTTGCCTGCATTCTGTGTGTTTTCCCTCAGGCATTAACGGCGCGAGACTCTTCTCCCTCGTCACCGACGGCTCAGATTAACTCCAACTCAATCTTAGTTGCTCTTCTGGACTCGCATTACACAGAACTTGCAGAGCTTGTGGAAAAAGCCATGCTGTTGCAGAAACTAGAGGAAGCCGTGGCGGCAAACAACATAACAATCTTCGCTCCGACCAACGAAGCTTTGGACCGGAATCTCGACTCTGATTTCAAGCGCTTCCTTCTCGAACCCGCCAACCTTCACTCCCTCCAAACGCTTCTCCTCTCCCACATCGTCCCCAGCCGAATCGGATCCCAAACCCTAATCCGCCACGTCACCACTCTCTCCAACCACCAAATCCGTCTCTCCGAAAACCTCACCACCGTCGACCAGGCCCGTGTTACCCACCCGGATGCCATAACCCGACCCGACGGTGTCATACACGCCATCGACCGCCTCCTCTTCCCCCGCTCCGTCGAGGACGACTTCAACCGCCGCCGCACTCTCCGTTCCATCTCTGCCGTCAAGCCCGAGGGAGCCCCGGAGGTCGACCCGAGAACCCACCGTCTCAAAAAGCCTCCCCCACCGGTGAAACCTGGCTCCCCGCCGGCTCTTCCGATCTACGACGCCATGTCTCCGGGACCTTCCCTGGCTCCGGCGCCGGCGCCGGGGCCGGGTGGACCGCACCATCACTTCAATGGCGAGAAGCAGGTGAAGGATTTCATCCACACGCTCCTCCACTATGGTGGATACAACGAGATGGCGGACATTCTCGTGAATCTAACGTCGTTGGCCGTTGAAATGGGTCGTTTAGTGTCTGAGGGTTACATTCTCACCGTTTTGGCTCCGAACGACGAAGCCATGGCGAAGTTAACGACGGAGCAGTTGAGTGAACCGGGTGCGCCGGAGCGGATAATGTATTATCACATTATACCGGAGTATCAGACTGAAGAGAGCATGTACAATGCAGTTCGAAGGTTTGGGAAGGTTCGTTACGATACTCTGCGGTTGCCGCATAAGGTGGTGGCGCAGGAGGCTGATGGGTCCGTTAAATTCGGGCACGGGGACGGGTCGGCGTATTTGTTTGACCCGGATATTTACACGGATGGTCGGATCTCGGTTCAGGGGATTGACGGGGTTTTGTTTCCGACGGAAGAGGAGGAGGAGTCGGAGCGGGTTAAAACCACTACCCGTTCGGGTCAACCCGCTGCAAAAGTTGTTTTCAAGCACAGGAGAGTTTTGGCCTTGTGGGATCTAGGTGGGACTGGAAGAGTTGAAATTTGTTCTGTATTAGATATTTACATGTGTGAGGTGAAGTTTCCTAAAGGTGAAACAGACGTTTTTTTAGGAGAAATTAAGGAAAATTACTTGAAGCAGCATGCTGGATGCTTGGAACCTTTGGACAACATTCTAGATTCACCTCTTGTCAATGAAGAAGCCCACATTTTTCTGGCTTTCTCTAATCCTGAAAAAAATGATATCCAGTGGAAATCCGTTCAATGTAAAAAGTCAAAAATGAAGGCCATCTTTTGGTTGAATGGGATGTTGGCAGCTGCTTTGGGTGAAGAAGCCAAGGATTTGAGTAGAGAAAGTGAAATATTGGAGGAAAGGGAGGTTGCTAAAAAGCTTGCCAAGATAAAAGAGAGTGGCAAGTCTTCTGTCCTACTCGATGTCAAGCCTTGGGATGATGAGAGCGGCATGAAGAAGTTGGGAGAGGTTGTCCGCAGTATTGAGATGCCTGGTTTATTGTGGAGCACTTATGTTCAAAGAAAGGCATTTGCTGAGATTTCGTCCAGTGATGATTCTGGTGAAAACAGCCCTGACATTTCTGATCACAAAGAGAAAGTGGAAGAAGTTGATACTGTTATACAGAAAGAAACTGTAGTTTTTGACCTTGATAAGGAGGATGATGCACCGGGACATCCACTCAACCAGGAAAATAATGAGTATGTGTCTCAATCTACTTCAGTCAGTGCATCTACTAAAGTTAAGTCCAGTAATCGTGGTTCCCTTGTCCAGGCTACTATATCCACATTATTCAAGAAAGTGAATGAAAAGTTAATAAAATGGAAGAAAGTTAGGGCGTGGAAAAGGATAAAATGGAAGAACATTAGAAATTTTAGTCATTTCTTCTGGGTTGTACTGTTACCTGTTCATTTGATTAATGTTCCCATGTGTGAACCTTTGTCAACATATCCTCACATCTATGATCTGATCCATGCAACAAACATCGAATCACTTATAAAGGATGCCTCTGCCAAAAACAGATGTAACCTTATTGATTTGATGGTGGAATTGGATCGAATTTTACTCCCAGAAGGAACTGTGGTGGTGAGGGATACCCCTGAAGTAATTGAAAGAGTAGCTCGTGTTGCACATGAAATAAAGTGGAAGCCCTCTATATAA 2472 0.4854 MGRRIYGVSDLRVFYTVACILCVFPQALTARDSSPSSPTAQINSNSILVALLDSHYTELAELVEKAMLLQKLEEAVAANNITIFAPTNEALDRNLDSDFKRFLLEPANLHSLQTLLLSHIVPSRIGSQTLIRHVTTLSNHQIRLSENLTTVDQARVTHPDAITRPDGVIHAIDRLLFPRSVEDDFNRRRTLRSISAVKPEGAPEVDPRTHRLKKPPPPVKPGSPPALPIYDAMSPGPSLAPAPAPGPGGPHHHFNGEKQVKDFIHTLLHYGGYNEMADILVNLTSLAVEMGRLVSEGYILTVLAPNDEAMAKLTTEQLSEPGAPERIMYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPTEEEEESERVKTTTRSGQPAAKVVFKHRRVLALWDLGGTGRVEICSVLDIYMCEVKFPKGETDVFLGEIKENYLKQHAGCLEPLDNILDSPLVNEEAHIFLAFSNPEKNDIQWKSVQCKKSKMKAIFWLNGMLAAALGEEAKDLSRESEILEEREVAKKLAKIKESGKSSVLLDVKPWDDESGMKKLGEVVRSIEMPGLLWSTYVQRKAFAEISSSDDSGENSPDISDHKEKVEEVDTVIQKETVVFDLDKEDDAPGHPLNQENNEYVSQSTSVSASTKVKSSNRGSLVQATISTLFKKVNEKLIKWKKVRAWKRIKWKNIRNFSHFFWVVLLPVHLINVPMCEPLSTYPHIYDLIHATNIESLIKDASAKNRCNLIDLMVELDRILLPEGTVVVRDTPEVIERVARVAHEIKWKPSI 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00650 823 MobiDBLite consensus disorder prediction 216 231 - -
Vian11g00650 823 SMART fasc_3 82 179 IPR000782 -
Vian11g00650 823 SMART fasc_3 301 406 IPR000782 -
Vian11g00650 823 Pfam EF-1 guanine nucleotide exchange domain 575 613 IPR014038 GO:0003746|GO:0006414
Vian11g00650 823 Pfam Fasciclin domain 299 404 IPR000782 -
Vian11g00650 823 Pfam Fasciclin domain 55 178 IPR000782 -
Vian11g00650 823 Gene3D - 566 619 IPR014717 -
Vian11g00650 823 SUPERFAMILY eEF-1beta-like 570 609 IPR036219 -
Vian11g00650 823 MobiDBLite consensus disorder prediction 619 638 - -
Vian11g00650 823 ProSiteProfiles FAS1/BIgH3 domain profile. 260 388 IPR000782 -
Vian11g00650 823 ProSiteProfiles FAS1/BIgH3 domain profile. 43 176 IPR000782 -
Vian11g00650 823 Gene3D FAS1 domain 284 405 IPR036378 -
Vian11g00650 823 SUPERFAMILY FAS1 domain 239 406 IPR036378 -
Vian11g00650 823 Gene3D FAS1 domain 24 179 IPR036378 -
Vian11g00650 823 SUPERFAMILY FAS1 domain 42 179 IPR036378 -
Vian11g00650 823 Coils Coil 539 559 - -
Vian11g00650 823 MobiDBLite consensus disorder prediction 192 253 - -
Vian11g00650 823 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 6 434 IPR044654 -
Vian11g00650 823 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 747 821 IPR004159 GO:0008168
Vian11g00650 823 FunFam Fasciclin-like arabinogalactan protein 16 255 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00650 Vian-Chr11 6741284 6756647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00650 567 607 Eukaryotic Initiation Factors Gene Family AT5G19510 75.610 1.74e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00650 - - gmx:100782264 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00650 11 6741284 6756647 Vian5g00959 5 30866520 30868342 PCT