Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00634 ATGATGAGCGAGATGGAAATCGAGAGATACACCAGTCAGCGGTGGCGCCCAACAGATGATCAGGTCAAGATGATGACCAACATCTTCAACTATGGGGTCACTCATCCAAGCCGAGCGCAAGTCGTCGAGATCACGTCTCGACTAAGGACCTACGGAGATGCCAGCGAATACAACGTGCACTGCTGGTTCAACAACCACGGCAATCGGGTCAGGCGCTGGCAAGCGGAGATAGACCCCACTGGCACTCAGTTTTCACAACTGCCGCTGTATATGTACGTATTAACAAGATTTTTTTTGTTGAAAGAAAATGGCTGGGTGGTAATGAGGGCACCAAGGCTGCTGGATTTATTCCCAGTCCCGATCATCATCGACGACGACAGAGACGTACGACAAATCCAGCCACCCATGATTCTCACATTCCGAACCAGAGCTCCCTCAACGGAGCTCTCCCTTAGACCTCCACAACCAGCTCGAGAGTTCTTTCGTTGA 489 0.5112 MMSEMEIERYTSQRWRPTDDQVKMMTNIFNYGVTHPSRAQVVEITSRLRTYGDASEYNVHCWFNNHGNRVRRWQAEIDPTGTQFSQLPLYMYVLTRFFLLKENGWVVMRAPRLLDLFPVPIIIDDDRDVRQIQPPMILTFRTRAPSTELSLRPPQPAREFFR 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00634 162 Gene3D - 12 77 - -
Vian11g00634 162 SUPERFAMILY Homeodomain-like 13 74 IPR009057 -
Vian11g00634 162 PANTHER WUSCHEL-RELATED HOMEOBOX 13 3 76 IPR044559 GO:0003700
Vian11g00634 162 ProSiteProfiles 'Homeobox' domain profile. 8 73 IPR001356 GO:0003677
Vian11g00634 162 Pfam Homeodomain 12 72 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00634 Vian-Chr11 6543046 6543585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00634 1 76 Wox Gene Family AT5G59340 39.474 6.17e-14 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vian11g00634 Homeodomain 6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00634 - K01187 vum:124821070 270.396