Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00630 ATGAAGAAAAGCATTAATGGAGGGAACCGAGAAAAGCGTGAGAAAGCATCCAATCATGGCAAAATGCATGAGCCTCATCAGAAGTTGTCGGCAACAACCATGCAAAGATTAAGACTCCGTTTCCAGCCTTTTAGCATGGATGAAATTGAAATTCCTGCTCATTTTCTTTGCCCCATTTCCCTCCAACTCATGAGGGACCCTGTAACTGTTTGCACAGGAATCACTTATGACAGAGAGAACATAGAGAAGTGGTTGTTTTCATGCAAGAACAACACATGCCCCGTTACCAAGCAGTGCCTATTGGATCATGATCTCACCCCAAACCACACTCTACGCAGGTTGATCCAATCTTGGTGCACCCTCAATGCCTCATTTGGAGTTGAACGCATTCCAACTCCAAAGTCACCAATCGACAGAACTCAGATTGTGAAACTCCTCGTAGAAGCAAAGAAGTTCCCCGAGAAGCAACTCAAATGCCTCACAAGACTTCGATCCATTGCCTTTGAGGGTCAAAGGAACAAGGCCTGTTTAGAGTCTGCAGGAGTTGTTGAATTCTTGGCCTCAACCATGAAGCACAAGACAGAAGAAAACTCAACTGTTCTCTGTGAAGCAGCTATCGAAGTCTTTTTCCACCTTAGCCCTTCTGAGGCTCAGCTTAAAGCTCTCTTATATAACGAGGGGTTTCAGTTTATTGAATCATTGTTCCACGCGTTGAGGCTTGGAAACTACCAATCGAGAGCTTATGCAACCATGCTGCTTAGATCGGCATTGGAGGTGGCTGATCCCATCCAATTGATCAGTGTCAAAACAGTGCTGTTTGTGGAAATCTTGCGCGTGCTGCGTGATCAGATTTCGCAACAGGCTTCAAAGGCTGCATTGAAGCTGATCGTGGAGCTCTTTCCGTGGGGCAGAAACAGGATCAAAGGGGTTGAGGGTGGTGCAGTTTCGGTCCTGATTGAGCTACTTCTTTGTACCTCGGAAAGAAGAACCTGTGAACTGATTTTAATAGCTTTGGATCAACTTTGTGGGTGTGCAGAAGGGCGTGCAGAGTTGTTGAACCATGGTGCAGGAGTGGCCATTGTGTCCAAGAAAATTCTAAGGGTCTCTCTCGTGGCAAGCGATAGAGGGGTTAGAATTTTGGCCTCCATTTGTAGGTATTCCGCCAATGCTAGGGTGCTCCATGAAATGTTGCAGGTTGGGGCTGTGTCAAAGTTGTGTTTGGTGCTTCAAGTGAATTGCAATTTCAAGACCAAAGAGAGAGCCAAGGAGATACTCAGATTGCATTCCTCAGTTTGGAAGAATTCTCCATGTATTCCTGTTCCTTTGTTATCTTCTTTTCCTTGA 1344 0.4561 MKKSINGGNREKREKASNHGKMHEPHQKLSATTMQRLRLRFQPFSMDEIEIPAHFLCPISLQLMRDPVTVCTGITYDRENIEKWLFSCKNNTCPVTKQCLLDHDLTPNHTLRRLIQSWCTLNASFGVERIPTPKSPIDRTQIVKLLVEAKKFPEKQLKCLTRLRSIAFEGQRNKACLESAGVVEFLASTMKHKTEENSTVLCEAAIEVFFHLSPSEAQLKALLYNEGFQFIESLFHALRLGNYQSRAYATMLLRSALEVADPIQLISVKTVLFVEILRVLRDQISQQASKAALKLIVELFPWGRNRIKGVEGGAVSVLIELLLCTSERRTCELILIALDQLCGCAEGRAELLNHGAGVAIVSKKILRVSLVASDRGVRILASICRYSANARVLHEMLQVGAVSKLCLVLQVNCNFKTKERAKEILRLHSSVWKNSPCIPVPLLSSFP 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00630 447 MobiDBLite consensus disorder prediction 1 26 - -
Vian11g00630 447 ProSiteProfiles U-box domain profile. 50 125 IPR003613 GO:0004842|GO:0016567
Vian11g00630 447 FunFam RING-type E3 ubiquitin transferase 45 128 - -
Vian11g00630 447 SMART Ubox_2 54 118 IPR003613 GO:0004842|GO:0016567
Vian11g00630 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 125 IPR013083 -
Vian11g00630 447 PANTHER WDSAM1 PROTEIN 47 439 IPR045185 GO:0061630
Vian11g00630 447 MobiDBLite consensus disorder prediction 1 29 - -
Vian11g00630 447 SUPERFAMILY ARM repeat 151 425 IPR016024 -
Vian11g00630 447 Gene3D - 126 436 IPR011989 -
Vian11g00630 447 CDD RING-Ubox_PUB 52 105 IPR045210 -
Vian11g00630 447 Pfam U-box domain 51 120 IPR003613 GO:0004842|GO:0016567
Vian11g00630 447 SUPERFAMILY RING/U-box 41 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00630 Vian-Chr11 6486854 6488737 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00630 47 447 U-box Gene Family AT2G35930 56.049 1.02e-162 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00630 - - gmx:100778012 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00630 11 6486854 6488737 Vian11g00630 11 6486854 6488737 ECH
Vian11g00630 11 6486854 6488737 Vian5g00972 5 31064306 31065496 PCT