Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00629 ATGACAGAAATTGAAATTCCTCAGTTTTTTGCTTGTCCCATTTCGCTTCAGATCATGAAGGACCCTGTGGCAACCGTTACGGGCATAACCTACGACAGAGAAAGCATAGAATACTGGTTGTTGAAAGCCAAAGATTGCACGTGTCCAATCACAAAGCAACCATTGCCGCGAAACGCAGAGTTCTTAACCCCAAACCACACGCTTCGGAGGCTAATCCAAGCGTGGTGTTCAGCGAATGAAGCATACGGTGTTGATCAGATTCCGACACCGAAATCCCCTCTTAGCAATGCCGACGTTGAGAAGCTCGTGAAGGATCTCGAAGTTCCTCCACGCTTTCAAAACGCAATGGAGAAGTTGCATAACCTTGCAGTAGAGAACGAGAGAAACAGGAGGTGTATGGCTTCAGTGGGTGTTGCAGAAGCTATGGTGCACGTGATCACAAAGAGTTTCAAGCAGGGAAAAACGACGTCGTGCGTTGAGGAGGCTCTGAGGATTCTTCGTTTGCTTTGGAGCAGTGCCAATGTGGTGGACAGTAACCACATGAAGCGCTTGGTACGTCATAACTTTGACTTTCTGAACTCCTTGACGTGGGTTTTGCAGCTTCAAACTAAGAACAACATCAAGGTAATAAACGAAGCATTACCTTTATTGAAATTGACAATTGAAGCTAAAGATTCAACCCCTTTAGGGAACTTAGGGCTTGAATTCTTCAGAGTGGTTGTGAATGTGATGAAAAATAGAGAACTCTCTCAGCAAGCTATTAAATCTGCACTGCATGTGCTCATAGAAACGTGTCCTTTGGGGAGAAATAGAACGAAGATAGTTGAAGCAGGTGCGGTGCAGGATCTCGTTGAACTTGCGCTTGAAAAACCAGAAAAGAATCTAACAGAACTGGTATTCATCCTTTTGGCGCATCTGTGTTCTTGTGCTGATGGGAGAGACCAGTTTCTGCAGCATGCTGCAGGCCTTGCTGTGGTTTCAAAAAGGATCCTTAGGGTTTCTCCAACCACCGATGATCGAGCTCTTCATATATTTTCCTTGATTTCAAAGTTTTCAGCGTCTAATGAAGTCGTGCAAGAGATGCTGAGGGTTGGTGCTGTGTCAAAGCTTTGCATGGTGCTGCAAGCAGCTTGTGCTTCCCATTTGAAAGAAAAGGCAAGAGGTGTACTTAGGCTACACTCCAAAACATGGAACAATTCTCCCTGTATTCAAGTATGGTTTAGTTGGTCCTTTGATGCATGTAAAGTTCAGAGTAAGCTATCTGAATCTGATGTCTTAGGATCTGGGATGCTCTTGTAG 1299 0.4473 MTEIEIPQFFACPISLQIMKDPVATVTGITYDRESIEYWLLKAKDCTCPITKQPLPRNAEFLTPNHTLRRLIQAWCSANEAYGVDQIPTPKSPLSNADVEKLVKDLEVPPRFQNAMEKLHNLAVENERNRRCMASVGVAEAMVHVITKSFKQGKTTSCVEEALRILRLLWSSANVVDSNHMKRLVRHNFDFLNSLTWVLQLQTKNNIKVINEALPLLKLTIEAKDSTPLGNLGLEFFRVVVNVMKNRELSQQAIKSALHVLIETCPLGRNRTKIVEAGAVQDLVELALEKPEKNLTELVFILLAHLCSCADGRDQFLQHAAGLAVVSKRILRVSPTTDDRALHIFSLISKFSASNEVVQEMLRVGAVSKLCMVLQAACASHLKEKARGVLRLHSKTWNNSPCIQVWFSWSFDACKVQSKLSESDVLGSGMLL 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00629 432 PANTHER WDSAM1 PROTEIN 3 404 IPR045185 GO:0061630
Vian11g00629 432 Gene3D - 112 405 IPR011989 -
Vian11g00629 432 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Vian11g00629 432 SUPERFAMILY RING/U-box 3 85 - -
Vian11g00629 432 CDD RING-Ubox_PUB 7 55 IPR045210 -
Vian11g00629 432 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Vian11g00629 432 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Vian11g00629 432 SUPERFAMILY ARM repeat 229 377 IPR016024 -
Vian11g00629 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00629 Vian-Chr11 6480195 6481899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00629 3 403 U-box Gene Family AT2G35930 41.975 1.28e-106 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00629 - - gmx:100778547 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00629 11 6480195 6481899 Vian5g00973 5 31090071 31091249 PCT