Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00627 ATGGCGACGTACTTTCATGGAAGCACTTCGGAGATTCAATCTTCTGCAGATGGCTTGCAAACGCTTTACCTTATGAACCCATCTTACGTACCTTATGCTGACGCGCCGCACCACCCGACACTTCTCGTCAATCCCAACGCTACCAACGCGCTCAACCTCGCGAGTCTCACCCACGCGCCGCCGGTGTCGCCTTCCCCCAACCAGCAGCAGCACGTGATTCACGGCATGGCAAACATCCTCGGATCCGGGAATTCCGATGAGCACGCTCACAGCCGACTGTCGTTGTTCGGGGAAAACATCGCCGCCTTCCACGGTTTCTCCGGCGGGGCATCCTCCGCCGCCCCTCGCGTTCACTATAACCTCTGGGGCTCGGGGGTTGATCAACCTGGAACGCCTTCTAGCAGCTCCGGCGGTGGCGGTTTCCGGCGGCCCAGTCAGCAGGGGTTGTCTCTCAGCCTTTCTTCACAGCAAACAAATTTCAGGTCAGTTTCTGGGGAGCTTGATATTGCCGGACAGGGCCACGTCGCCGGAACTGGGAACTCGCCGACGTCGGCTGCGTCAACAGGAGTTTCCGGCCTGATTCTGGGGTCGAAGTATCTGAAGGCGGCGCAGGAGCTTCTGGATGAAGTTGTTAACGTAGGAAAAGGAATCTACAAAGAGGAAAAGTTCTCAGAGAAGGTGAAAGCGAATAGAGAATCTACTAATTCTGGTGCTGGTGGTGGCGATGGTTCGAGTGGTGGAGGAGAAAACAGTGCAGGAAAACAAGTGGTCGAACTCAGCACCGCTCAAAGGCAAGAACTTCAGATGAAGAAGTCCAAGCTTGTCAACATGCTCGATGAGAGGGTCAGTGAAATTGACAGTAATGCTGTCTCTCGTTTTCAGTTCTTTCTCGTGTGCCCTGAAATTATGCGTAGAGAGGAAACTAAACTGGCAGGAAAAGTGGAACAAAGGTACAGGCAATATCACCACCAAATGCAAATTGTGGTATCATCATTTGAGCAAGCTGCAGGTTATGGGGCTGCAAAATCATACACTGCCCTTGCCCTAAAGACTATCTCAAAGCAATTCCGGTGCCTTAAAGATGCAATCTCTGCGCAAATCAAAGCCACGAGCAAGACATTGGGTGAAGATGATTGCTTGGGAGTGAAAGTAGAAGGGTCAAGGCTTAGGTATGTTGACCACCATCTCAGGCAACAAAGGGCACTGCAGCAGCTAGGAATGATTCAGCCCAATGCATGGAGGCCACAAAGAGGCTTGCCAGAACGAGCCGTTTCCATTCTTCGCGCTTGGCTTTTTGAGCATTTTCTTCACCCCTATCCAAAGGACTCAGATAAAGTCATGCTTGCTAAGCAAACTGGACTGGCTAGAAGCCAGGTGTCAAACTGGTTTATCAATGCCCGGGTTCGGCTGTGGAAGCCGATGGTGGAAGAAATGTACATGGAAGAAATGAAAGATCACGAACAAGCTAACGGCTCAGAAAACACCAGATCAAAAGAATTGAGCAAAGAAGCAAATGTTGCAGCAGAATCAGGAGGCATTAAACTAGATAACTTTCAACCAAAGCAAGATAGCTTCAACAACCAAAACACTTCTCCAAATGAAATCTCAGCAAATTCTTCAATGTCTCCTATCGGAGGGTCCCTTCAATCCCACTCTGGTTTCCATCTTGCAGGATCATCTGAGGTGCAAACGAGTCCAAACAAACCCAGAAGATCGGAAATGCAAAACTCTCCAAGTAGTATCCTCTCAGTGGACATGGAAATGAAGCATAATGGTGAACATGCAAATACCAGAGAAGGCAACACAAAGTTCGGCATCGAAAGGCACGACAAAGATGGATACCCTTTGATGAGTGGCAATGCAAACCATGGCGGGGGTTTTGGAGCGTTCACCATGGAAGACATTGGAAACAGATTCAACGTGAGTACTGAGCAACTGGCTTCAAGGTTCCATGGAAATGGTGTTTCTCTCACACTAGGCCTTCCCCACAACGAAAACCTTTCTATGTCAGGAACTTCGCATGGATTTCTCTCACAGAATATTCATTTGGGAAGGAGACTTGAGATGGGAACGAGTGGGAATGAGTTTTGTGCCATCAACACTCCTCCTTCGTCTCACTCAGGAACAACCTATGAGAGCATTGACATTCAAAACAGAAAGAGGTTTGTTGCTCAGTTATTACCTGATTTCGTGGCCTAA 2199 0.4907 MATYFHGSTSEIQSSADGLQTLYLMNPSYVPYADAPHHPTLLVNPNATNALNLASLTHAPPVSPSPNQQQHVIHGMANILGSGNSDEHAHSRLSLFGENIAAFHGFSGGASSAAPRVHYNLWGSGVDQPGTPSSSSGGGGFRRPSQQGLSLSLSSQQTNFRSVSGELDIAGQGHVAGTGNSPTSAASTGVSGLILGSKYLKAAQELLDEVVNVGKGIYKEEKFSEKVKANRESTNSGAGGGDGSSGGGENSAGKQVVELSTAQRQELQMKKSKLVNMLDERVSEIDSNAVSRFQFFLVCPEIMRREETKLAGKVEQRYRQYHHQMQIVVSSFEQAAGYGAAKSYTALALKTISKQFRCLKDAISAQIKATSKTLGEDDCLGVKVEGSRLRYVDHHLRQQRALQQLGMIQPNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLARSQVSNWFINARVRLWKPMVEEMYMEEMKDHEQANGSENTRSKELSKEANVAAESGGIKLDNFQPKQDSFNNQNTSPNEISANSSMSPIGGSLQSHSGFHLAGSSEVQTSPNKPRRSEMQNSPSSILSVDMEMKHNGEHANTREGNTKFGIERHDKDGYPLMSGNANHGGGFGAFTMEDIGNRFNVSTEQLASRFHGNGVSLTLGLPHNENLSMSGTSHGFLSQNIHLGRRLEMGTSGNEFCAINTPPSSHSGTTYESIDIQNRKRFVAQLLPDFVA 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00627 732 MobiDBLite consensus disorder prediction 484 503 - -
Vian11g00627 732 MobiDBLite consensus disorder prediction 126 157 - -
Vian11g00627 732 CDD homeodomain 413 473 IPR001356 GO:0003677
Vian11g00627 732 MobiDBLite consensus disorder prediction 517 578 - -
Vian11g00627 732 SUPERFAMILY Homeodomain-like 414 481 IPR009057 -
Vian11g00627 732 MobiDBLite consensus disorder prediction 124 157 - -
Vian11g00627 732 Gene3D - 416 495 - -
Vian11g00627 732 MobiDBLite consensus disorder prediction 484 578 - -
Vian11g00627 732 MobiDBLite consensus disorder prediction 225 254 - -
Vian11g00627 732 ProSiteProfiles 'Homeobox' domain profile. 410 473 IPR001356 GO:0003677
Vian11g00627 732 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 124 497 - -
Vian11g00627 732 SMART HOX_1 413 477 IPR001356 GO:0003677
Vian11g00627 732 FunFam BEL1-like homeodomain protein 9 416 478 - -
Vian11g00627 732 Pfam Homeobox KN domain 430 469 IPR008422 GO:0003677|GO:0006355
Vian11g00627 732 SMART prehox3 188 365 IPR006563 -
Vian11g00627 732 Pfam Associated with HOX 194 364 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00627 Vian-Chr11 6446102 6449891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00627 1 732 Homeobox Transcription Factor Family AT2G35940 43.511 1.95e-138 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vian11g00627 POX 1.8e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00627 - - gmx:100779075 1127.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00627 11 6446102 6449891 Vian11g00627 11 6446102 6449891 ECH