Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00622 ATGCAGACCTATAGGCTAACCATGGAAGGTGTTCAGATAGAACAAGTCTTCGTCTTGTTTTGTTTTTGTCTGATAGCCACAGTGAGTTTTGGTGCTACAAACCCAAATGATGTCAAAGTTTTGAATGATTTCAGAAAAGGGTTGGAGAATCCTGAGCTTTTGAAGTGGCCGGAGGACGGAGATGATCCCTGTGGTCCTCCTTTATGGCCTTTCGTGTACTGTTCTGGAGACAGAGTCAACCAGATTCAGGCAAAGAATCTTGGTCTTAGAGGGTCATTGCCTCAAAACTTTAACCAACTCTCAGAACTCTACAATTTGGGTCTCCAACGCAACAACCTCAGTGGGGTGTTGCCCTCTTTTAGTGGATTATCCAAATTGGAATTTGCTTTCTTGGATTACAATAAATTTGATTCAATTCCATCTGATTTCTTTATTGGGCTTAGCAGCCTTAGAGTCTTGTCTTTGGAAGAAAATCCACTGAATATGAGTAGTGGATGGTTGTTTCCCATGGATTTGGAAAAATCAGTACAGTTAACCAACCTTTCTCTGGTGCAATGTAACTTGGTTGGACCGTTACCGGATTTTCTCGGCACATTGCCATCTCTCACAAATCTGAGGCTTTCAGGTAACAAGCTGTCTGGTGCCATACCTGCAACTTTTGCACAGTCTTCAATCCAGGTTTTGTGGTTGAATAATCAAGAAGGTGGTGGGTTGAGTGGTCCTATTGATGTTATTGCTTCAATGCCTTTCCTTAGACAGGTTTGGCTACATGGAAACCGATTAACTGGGTCAATTCCTCAGAATATTGGAAATCTAACTTCCTTGCAGGAACTCAATCTCAATAGCAATCAACTTGTTGGCTTGATTCCAGAGTCTCTGGCACTTATGGATCTTGATATCCTTGTGTTAAATAACAACATGCTAATGGGTCCAATACCAAAATTTAAGGCTGCCAATGTTTCTTATGATTACAATTTATTTTGTCAAAATGAGCCTGGACTTGAATGTGGCCCTCAAGTTACTATTTTGCTGGATTTTCTAGATAAGATGAATTACCCTTCATTTCTCGTTTCTGATTGGTCTGGTGATGAACCTTGCACACGCAGCACAGGGTCATGGTTTGGATTGAGCTGCAATTCCAACTCAGAGATATCTATTATCAATCTACCTAGACACAAGCTAAATGGTACACTAAGTCCCTCACTTGCTAAGTTAGATTCACTCCGTCAAATTAGGCTTTCAGGAAACAACATAACCGGCTCTGTTCCTACTAATTTCACCAAATTAACATCTTTGGAGTTGTTGGATTTAAGTAATAACAATCTTGAGCCTCCATTTCCAAATTTTCATGATGATTTGAAGATTATTATCACGGGTAATCCCCTTCTTCTGAATAAAACTGGAGGAAGTCCCAGTCCTATGCCTATTAACAGCCCACCTTCACCACAAGATCCATCACAGCCTCCATCCTCTCATAAGCCACCTATTCCAGATCAGAGTTCAAGAGCAAATCAATCCAAGCCTAATGAATTGAAAAGATTCAAAACAGCAGCAATTGTGGCTGGAGTTGTATTGTTTACTCTTGTAGCACTTTTGGTTGTTTATTTCTTGCTATGTTGTAGGAAGAAGAAAAAAGCCTCCTTAGATGCTCCAAGTTCCATTGTGGTCCACCCTCGCAATCCATCTGATCCAGACAACATAGTTAAAATTGCAGTTTCGACCGCCACTGGAAGTTTGTCTACAAAGACTGGTACAAGTTCTCTGAGTAACATCAGTGGTGAAACTCAAAACTCTCACATGATTGAGGATGGAAACCTTGTCATCTCTATACAAGTACTACGCAAGGTTACCAATGAATTTGCTTCAGAAAATGAACTAGGTCGTGGAGGGTTTGGGACTGTTTACAGGGGGGAACTTGAAGATGGGACAAAAATAGCTGTGAAGAGAATGGAGCATGGGGTTATTACCAGTAAGGCAATAGAGGAGTTTCAAGCAGAAATAGCTGTTCTTTCCAAGGTACGGCACCGCCATCTGGTATCCTTGTTGGGGTATTCCATTGAAGGCAATGAAAGACTTTTGGTTTATGAATATATGTCTCTTGGAGCTCTAAGCCAGCATCTTTTTCATTGGAAAAGCTTGAACCTGGAGCCTTTGTCTTGGTCAAAGAGGCTTGCAATAGCACTAGATGTTGCCAGAGGGATAGAATACCTTCACAGTCTTGCCCGTCAGACTTTTATTCATCGAGATCTTAAGTCTTCTAATATCTTATTGGGTGATGATTTCCGAGCTAAAGTTTCAGATTTTGGTTTGGTGAAGCATGCCCCAGACAGTGAGAAGTCTGTAGTTACCAAGCTTGCTGGGACATTTGGATACCTTGCCCCTGAATATGCAGTGATGGGGAAAATCACCACAAAAGTTGATGTGTTCAGCTACGGTGTGGTTTTGATGGAACTTCTGACTGGACTTGTGGCACTTGATGAGAGCCGACCAGAGGAGAGCCGGTACTTGGCTGAATGGTTTTGGCGAATTAAATCAAGCAAGGAGAAGCTTATGGCTGCCATTGATCCAGTTGTGGAAGCATCTGAAGAAACTTTTGACAGCATAACTATTGTAGCTGAACTTGCTGGACATTGCACTGCAAGGGAAGCACATCATAGGCCAGATATGGGTCATGCAGTCAATGTCCTATCAGCAATAGTGGAAAAATGGCAACCAGTTGATGATGAATTAGACTGCTACTCTGGCATCGACTACACAAGACCACTTCCTCAGATGTTGCAGATTTGGAAGGAAGCAGAAAGCAAAGAGTTCAGCTATGCTTCTAGTCTTGACAACAGCAGAAGCAGTATTGCAGCCAGGCCTACTGGGTTTGCAGACTCTTTTACTTCTGCTGATGCAAGATGA 2904 0.4198 MQTYRLTMEGVQIEQVFVLFCFCLIATVSFGATNPNDVKVLNDFRKGLENPELLKWPEDGDDPCGPPLWPFVYCSGDRVNQIQAKNLGLRGSLPQNFNQLSELYNLGLQRNNLSGVLPSFSGLSKLEFAFLDYNKFDSIPSDFFIGLSSLRVLSLEENPLNMSSGWLFPMDLEKSVQLTNLSLVQCNLVGPLPDFLGTLPSLTNLRLSGNKLSGAIPATFAQSSIQVLWLNNQEGGGLSGPIDVIASMPFLRQVWLHGNRLTGSIPQNIGNLTSLQELNLNSNQLVGLIPESLALMDLDILVLNNNMLMGPIPKFKAANVSYDYNLFCQNEPGLECGPQVTILLDFLDKMNYPSFLVSDWSGDEPCTRSTGSWFGLSCNSNSEISIINLPRHKLNGTLSPSLAKLDSLRQIRLSGNNITGSVPTNFTKLTSLELLDLSNNNLEPPFPNFHDDLKIIITGNPLLLNKTGGSPSPMPINSPPSPQDPSQPPSSHKPPIPDQSSRANQSKPNELKRFKTAAIVAGVVLFTLVALLVVYFLLCCRKKKKASLDAPSSIVVHPRNPSDPDNIVKIAVSTATGSLSTKTGTSSLSNISGETQNSHMIEDGNLVISIQVLRKVTNEFASENELGRGGFGTVYRGELEDGTKIAVKRMEHGVITSKAIEEFQAEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEYMSLGALSQHLFHWKSLNLEPLSWSKRLAIALDVARGIEYLHSLARQTFIHRDLKSSNILLGDDFRAKVSDFGLVKHAPDSEKSVVTKLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLVALDESRPEESRYLAEWFWRIKSSKEKLMAAIDPVVEASEETFDSITIVAELAGHCTAREAHHRPDMGHAVNVLSAIVEKWQPVDDELDCYSGIDYTRPLPQMLQIWKEAESKEFSYASSLDNSRSSIAARPTGFADSFTSADAR 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00622 967 FunFam Receptor-like kinase TMK4 35 333 - -
Vian11g00622 967 SUPERFAMILY L domain-like 71 449 - -
Vian11g00622 967 ProSiteProfiles Protein kinase domain profile. 620 900 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g00622 967 ProSitePatterns Serine/Threonine protein kinases active-site signature. 745 757 IPR008271 GO:0004672|GO:0006468
Vian11g00622 967 SMART serkin_6 620 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g00622 967 Gene3D Phosphorylase Kinase; domain 1 581 697 - -
Vian11g00622 967 SMART LRR_typ_2 147 170 IPR003591 -
Vian11g00622 967 SMART LRR_typ_2 248 271 IPR003591 -
Vian11g00622 967 SMART LRR_typ_2 100 122 IPR003591 -
Vian11g00622 967 SMART LRR_typ_2 429 451 IPR003591 -
Vian11g00622 967 SMART LRR_typ_2 272 295 IPR003591 -
Vian11g00622 967 SMART LRR_typ_2 405 428 IPR003591 -
Vian11g00622 967 SMART LRR_typ_2 199 222 IPR003591 -
Vian11g00622 967 SMART LRR_typ_2 123 146 IPR003591 -
Vian11g00622 967 Gene3D Transferase(Phosphotransferase) domain 1 698 913 - -
Vian11g00622 967 FunFam Leucine-rich repeat receptor-like kinase 338 466 - -
Vian11g00622 967 FunFam receptor protein kinase TMK1 582 697 - -
Vian11g00622 967 Pfam Protein tyrosine and serine/threonine kinase 623 891 IPR001245 GO:0004672|GO:0006468
Vian11g00622 967 Gene3D Ribonuclease Inhibitor 34 333 IPR032675 -
Vian11g00622 967 SUPERFAMILY Protein kinase-like (PK-like) 595 904 IPR011009 -
Vian11g00622 967 CDD STKc_IRAK 626 896 - -
Vian11g00622 967 Pfam Leucine rich repeat N-terminal domain 35 75 IPR013210 -
Vian11g00622 967 Pfam Leucine rich repeat N-terminal domain 338 379 IPR013210 -
Vian11g00622 967 FunFam receptor protein kinase TMK1 698 915 - -
Vian11g00622 967 MobiDBLite consensus disorder prediction 473 495 - -
Vian11g00622 967 ProSitePatterns Protein kinases ATP-binding region signature. 626 648 IPR017441 GO:0005524
Vian11g00622 967 PANTHER OSJNBA0070M12.3 PROTEIN 17 967 - -
Vian11g00622 967 MobiDBLite consensus disorder prediction 467 509 - -
Vian11g00622 967 Gene3D Ribonuclease Inhibitor 338 466 IPR032675 -
Vian11g00622 967 PRINTS Leucine-rich repeat signature 202 215 - -
Vian11g00622 967 PRINTS Leucine-rich repeat signature 429 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00622 Vian-Chr11 6338139 6341595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00622 91 914 Receptor kinase-like Gene Family AT1G55610 30.184 1.77e-83 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vian11g00622 PK_Tyr_Ser-Thr 4.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00622 - - gmx:100785090 1605.11