Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00618 ATGGAGTCGCGGATGGATCACTACGAGATCATGGAGCAGATCGGTCGCGGAGCGTTTGGCGCTGCGATTCTGGTGAACCACAAAGCGGAGAAGAAGAAGTACGTATTGAAGAAAATCAGGCTCGCGCGGCAGACTGAACGATGCAGAAGATCTGCTCATCAGGAGATGGCACTTATTGCTCGAATTCAGCATCCTTACATTGTGGAATTCAAAGAGGCTTGGGTTGAGAAGGGTTGCTATGTTTGCATTGTTACTGGATATTGTGAAGGTGGAGACATGGCTGCATTGATGAAAAAGTCAAATGGGGTTTGCTTTCCTGAGGAGAAACTCTGCAAGTGGTTTACTCAATTACTCTTGGCAGTGGAATACTTGCATTCAAATTTTGTTTTACATCGCGACCTAAAGTGTTCCAATATCTTTCTTACCAAGGATCAAGATGTTCGACTTGGGGATTTTGGGCTTGCTAAGACACTAAAAGCGGATGATTTGGCTTCTTCGGTGGTAGGAACTCCCAACTATATGTGTCCTGAACTGCTTGCGGATATTCCTTATGGATTCAAATCTGATATTTGGTCTCTAGGGTGTTGTATATATGAGATGGCTGCTCATCGCCCAGCTTTTAAAGCTTTTGATATGGCAGGTTTGATAAGTAAGATAAACCGTTCCTCTATTGGCCCTTTGCCTCCCTGCTATTCCCCATCTTTGAAAACACTGATAAAGGGCATGCTGAGGAAAAATCCTGAGCATCGTCCAACGGCATCTGAAGTCTTAAAGCATCCTTATTTATTACCTTATGTTGACCAATATCGTTCATCTTTCTGTACTCCAACAGCCAGTTCTCCTGAAAAACCAATTTCTGCTGTTCATCATCATCGAAAAAATAAGCCAGAAGGTCAAAACAGTAGTAGTTCAAGTACAGAGAAAGATAGTTTGATGTCAATTATGAAAAACACTGCAAATGCAGTGCAGAAGTGTGATAGCAAAAGTACTGAACTAGACTTGACCTCAATCGAGGATGATGGCTCTGAACAACTCCAGCCTGATGAAGAAGGAAATGGCTCTATAAAAGTCAACGCCAAAACCATTGATCAAGAGGTGGCAAAGCAGTTTAATAATGAACACCATTCTAATGTTGTACCTAAGCAATCAATAGCAATTAAGAATGTGGTGACAACATTAAGAAATAGAAAACTTAGGGAGACAAGTTCTCCGATAAGAGGCAATAGCATAAAGGGTGGTGGTGTGTTGACGCATAAAATAAATACAGAGACATTGTCCAAATTGCCCAAACCCAATTTTGGTGCTTGTGATTTGAAGCCGAATTTGGAGGTGCCAACTATTGCATCTTCAAAAGCAACTCCTGATCCTGCTAAAAGATTTCAAGGATCACATACATCAAAGCATCAGTTACCAATGATTGAATCCACACCAAAAACTAAACCTCGACATACTGTGATTCCACCACTGGGTCCTTCCAAACAAGTAGAAGGTCGTGAAGTTCCTGCTAAGCCAAGGCAAAAGACTCCTCCAAGCTTACTTAAACCACCTTCTTTTCCAGGACATGTTAGGCAGGCTGGGTTTGATGTTCCCAATGCAGCAAACAATAGTGGAAAGTCAAGTCCAAACAAAATGGTTAGGGAGCCTAAGGTAAGCCATAATCAGTTGACCAACAGTCATCTACCACTTGTTTCTAGAGAGATTACTCGAGAGCCTTTAAAGACTTTTGAAAGCAGTTCCAAAGGAATGCAAACAGACAGCAGTAACTCTGTCTCATCTTCTTTTTCTATTCAAGGTTTCGAACTTTCTGATTTTGCAACCACTTTTATTGACTTAAGTGAAACAACACTTCTTGTTGAAGAGAGTTTAAACCACGCTGAAAATGTGGAATCACGAGGAGATAGCGGTTCACCTGCATCTTATTCGCATTTTGAGATGTCTGAACTATTGTCTGAAGAAGCCCCTGTCATTACGCCACACTTTCAGAAGATAATGACTAATGACGAGAAAGTAGGTCCCAGTTTATCTCCAGATCATTCAGTTCAAGATGCTAAGGTAATGTTTGCTTCTGATGATAATTTTCCCATAAATCAGAGGATCACATCTGCTGGCTCCAGGTGTGACAATACATCTGTAGAATCCTCTGCTGAAATCACAGAAGAAATAGAAGATGTTTCTAAGGAGATGTCTTCAACCAAGTCTCCTCAACAGCCTCTCCCCATTTCCGGAGAAAAGTCTGTTTGTGAAGAATTCGGTCCATCAAGCAAGCCAAATAACAGGCTTGATAAAGTTAGCCAGCCAAAACTTCTGTGCTTCTCCAGTGATGACAAATTTATGGTGAGGGGAAGACTGTCATCAGCGGAAGAAACTTCTCCTTTGATTATCTCTACTAAAATTTCAAGCCAGAAAGTTTTGCAAGAGGAGAAAGGAACAGTTTCGGCACCAGAAAGGCCAGCTGTTGGTCATTTTCCTCCAGCTTTTGATGATGTCATTCATGTCATACGCCATAGCAGTTATCGTGTGGGGAGTGAGCAGCCAGTGAAGGAATCCGTGGAGATGGGAGTTCAAAATGTAGATGTTGGTAAGTTTATCAACATTGTAAGGGATGATATAGAAATGAGAAACGTGAACACTCCCTTGACCCTAAAATCTTCTAGTTGCTCAGAAGCTATTGGTTTGAAGGCAAATATTTCTGAAAATATGGAAATTAGAAACTTGAATAATCCTCCTAACATAAAATCTTCAAGTTTCACCGACTCGTTGAGCATGAAATCAAGTCTTTCTGACAATCCTGGTGTCAGGGAACAAGATGTGGAAAATCCTGATTCTCTTGTTGCTAAATTTGATCCCCCCGAGTATTCCGGATACCCTCCTACAGCTGAAGGGGAACCACCAGCAAAGGAAGTTTTGGATGTTAAATCTTCAAGGCAGAGAGCTGAGGCCCTTGAAGGACTGTTAGAGTTATCTGCAGATTTGCTGCAGCAAAATAGATTGGAGGAACTTGCAGTTGTTCTAAAGCCTTTTGGAAAAGATAAAGTTTCCCCAAGGGAAACAGCCATTTGGTTAGCCAAGAGTTTAAAAGGACTGATGCTTGACGAAAGTGGAGGACGCAGTTAA 3114 0.4155 MESRMDHYEIMEQIGRGAFGAAILVNHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAALMKKSNGVCFPEEKLCKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEVLKHPYLLPYVDQYRSSFCTPTASSPEKPISAVHHHRKNKPEGQNSSSSSTEKDSLMSIMKNTANAVQKCDSKSTELDLTSIEDDGSEQLQPDEEGNGSIKVNAKTIDQEVAKQFNNEHHSNVVPKQSIAIKNVVTTLRNRKLRETSSPIRGNSIKGGGVLTHKINTETLSKLPKPNFGACDLKPNLEVPTIASSKATPDPAKRFQGSHTSKHQLPMIESTPKTKPRHTVIPPLGPSKQVEGREVPAKPRQKTPPSLLKPPSFPGHVRQAGFDVPNAANNSGKSSPNKMVREPKVSHNQLTNSHLPLVSREITREPLKTFESSSKGMQTDSSNSVSSSFSIQGFELSDFATTFIDLSETTLLVEESLNHAENVESRGDSGSPASYSHFEMSELLSEEAPVITPHFQKIMTNDEKVGPSLSPDHSVQDAKVMFASDDNFPINQRITSAGSRCDNTSVESSAEITEEIEDVSKEMSSTKSPQQPLPISGEKSVCEEFGPSSKPNNRLDKVSQPKLLCFSSDDKFMVRGRLSSAEETSPLIISTKISSQKVLQEEKGTVSAPERPAVGHFPPAFDDVIHVIRHSSYRVGSEQPVKESVEMGVQNVDVGKFINIVRDDIEMRNVNTPLTLKSSSCSEAIGLKANISENMEIRNLNNPPNIKSSSFTDSLSMKSSLSDNPGVREQDVENPDSLVAKFDPPEYSGYPPTAEGEPPAKEVLDVKSSRQRAEALEGLLELSADLLQQNRLEELAVVLKPFGKDKVSPRETAIWLAKSLKGLMLDESGGRS 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00618 1037 MobiDBLite consensus disorder prediction 459 473 - -
Vian11g00618 1037 Gene3D Transferase(Phosphotransferase) domain 1 90 337 - -
Vian11g00618 1037 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g00618 1037 MobiDBLite consensus disorder prediction 448 516 - -
Vian11g00618 1037 MobiDBLite consensus disorder prediction 905 964 - -
Vian11g00618 1037 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Vian11g00618 1037 MobiDBLite consensus disorder prediction 725 761 - -
Vian11g00618 1037 SUPERFAMILY Protein kinase-like (PK-like) 4 311 IPR011009 -
Vian11g00618 1037 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 5 986 - -
Vian11g00618 1037 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Vian11g00618 1037 CDD STKc_Nek 7 262 - -
Vian11g00618 1037 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g00618 1037 FunFam Serine/threonine-protein kinase Nek2 5 87 - -
Vian11g00618 1037 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Vian11g00618 1037 MobiDBLite consensus disorder prediction 277 310 - -
Vian11g00618 1037 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g00618 1037 FunFam Serine/threonine-protein kinase Nek5 90 335 - -
Vian11g00618 1037 MobiDBLite consensus disorder prediction 905 932 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00618 Vian-Chr11 6284505 6291510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00618 14 262 MAP Kinase Kinase Kinase AT1G53570 31.890 7.06e-36 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vian11g00618 Pkinase 1.4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00618 K08857 - gmx:100780141 1696.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00618 11 6284505 6291510 Vian11g00618 11 6284505 6291510 ECH
Vian11g00618 11 6284505 6291510 Vian5g00982 5 31285989 31294223 PCT