Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00606 ATGGAAGGGGTTTCCAGGGAAGCCCATATGTCGATCGCTGCTTCTTCCATGTTTCCTGGCTTCAGATTCTGCCCCACCGATGAGGAGTTGATTTCTTACTACCTTAGGAAGAAGTTGGATGGCCATGAAGAGAGTGTTCAAGTCATTTCTGAGGTTGAGCTCTGTAAATTCGAGCCTTGGGATTTACCAGCCAAATCGTTCATTCAATCAAATAACGAATGGTTCTTCTTCTCTCCTCGTGGAAGAAAGTACCCAAATGGTTCACAAAGTAAAAGGGCAACTGAATGTGGATATTGGAAGGCCACCGGCAAAGAGCGTAATGTAAAGTCAGGTTCCAACGTTATAGGAACAAAGAGGACTTTGGTGTTTCACTTGGGGCGTGCACCTAAAGGGGAGAGGACTGAATGGATTATGCACGAGTACTGCATCAATGACAAATCTCAGGATTCTTTGGTTATTTGTCGGCTGAAGAGGAACACAGAGTTCCGTTTGAGTGATCATTCGAATAGAGCTTCTTCAAGTCAAAGGCATCCCGTGAATTCACACGAAAGTGGTTGTGCCATATCAGAAGGTGGTGGTATAGATCAAAGGGATGTTTGTGAGCAGGACAAAGAGGTGGGATGTAGCTCCAAGAGGAGCAGTAGCAGTTACGGTTCTCCTTCCAATGAGCAGATTGATTCTGTCTCGGAATCCAATCATCGACCAGTTAATGAAGCTACACTGACAGAATCTTCAGAACAAGCAAAGGAGGTGTATGAAGAGGATTGCTATGCAGAGATACTGAAGGATGATATCATAAAACTGGACGAATCATCAATCTCAGCAGAGGGTCACACAGGAGCACAGGAACCTGCACAGATGCATCCTGCGCAAGGCACAGCACAACGGAGAATAAGATTAAGGGTTGGGAATTCAAAGCGTTCTTCTTCTGCAGTGGTTGGTTTCCGAAGCACAATAATGCACTCTTCAAAGAGTACCTTCTTCGCCGGAATAAGCAACAGTTTGGTGGCACTTGTTTTCTTGGTTTTCACTCTGATATTTTTGCTGTTTGTTGGGTGGAGTCAGTCAAGTGAAGTGTTAAGCGGTTGTAACCTATGA 1098 0.4481 MEGVSREAHMSIAASSMFPGFRFCPTDEELISYYLRKKLDGHEESVQVISEVELCKFEPWDLPAKSFIQSNNEWFFFSPRGRKYPNGSQSKRATECGYWKATGKERNVKSGSNVIGTKRTLVFHLGRAPKGERTEWIMHEYCINDKSQDSLVICRLKRNTEFRLSDHSNRASSSQRHPVNSHESGCAISEGGGIDQRDVCEQDKEVGCSSKRSSSSYGSPSNEQIDSVSESNHRPVNEATLTESSEQAKEVYEEDCYAEILKDDIIKLDESSISAEGHTGAQEPAQMHPAQGTAQRRIRLRVGNSKRSSSAVVGFRSTIMHSSKSTFFAGISNSLVALVFLVFTLIFLLFVGWSQSSEVLSGCNL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00606 365 MobiDBLite consensus disorder prediction 165 194 - -
Vian11g00606 365 MobiDBLite consensus disorder prediction 166 182 - -
Vian11g00606 365 MobiDBLite consensus disorder prediction 208 247 - -
Vian11g00606 365 MobiDBLite consensus disorder prediction 209 246 - -
Vian11g00606 365 ProSiteProfiles NAC domain profile. 17 159 IPR003441 GO:0003677|GO:0006355
Vian11g00606 365 Pfam No apical meristem (NAM) protein 19 142 IPR003441 GO:0003677|GO:0006355
Vian11g00606 365 Gene3D NAC domain 26 179 IPR036093 GO:0003677|GO:0006355
Vian11g00606 365 MobiDBLite consensus disorder prediction 275 295 - -
Vian11g00606 365 SUPERFAMILY NAC domain 8 158 IPR036093 GO:0003677|GO:0006355
Vian11g00606 365 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00606 Vian-Chr11 6162293 6164719 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00606 4 275 NAC Transcription Factor Family AT2G27300 53.285 1.07e-96 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian11g00606 NAM 1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00606 - - tpra:123896537 512.686