Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00577 ATGTTTCACCCTCAAATTGCTCTCTTGCTTAATCTAAGAAGGGACAAATTAGGTTTCGATATCAAATCTCACGTTTCTGACGTATCGGTTCTCATCGTGTTTCAGGTTGCTAGAAAAATGGCGGAAGAACACCGATGCCAGGCACCACGCTTGTGCGTCAACAATTGCGGTTTCTTTGGCAGCCCTGCCACGCAGAATCTGTGCTCGAAGTGTTACCGCGATTTGCAGCTCAATGAGCAGCAATCTTCCAACGCGAAGATGGTTCTGAATCAGTCTCTTGTTCTTCCGGCGCCTCCGGCGCCGGTTTCTGAACCGTCTTCTTCGAAGACGGCGGATCCGGCTTCTGCTGTGGTTGAGGAAGTGCCACACGCGACGGAAGAGGCTAAGGCGCCGCTGCAGAACCGCTGTATGACGTGCAGGCGGCGCGTGGGGTTGACGGGGTTCAAGTGCCGGTGCGGGATGATGCTTTGCGGGACGCACCGTTACCCTGAGCAGCACGCGTGCGAGTTCGACTTCAAGGGGATGGGGAGGGACCAGATCGCGAAGGCGAATCCGGTGGTGAAGGGCGAGAAGCTCGAGAAGATCTGA 588 0.5527 MFHPQIALLLNLRRDKLGFDIKSHVSDVSVLIVFQVARKMAEEHRCQAPRLCVNNCGFFGSPATQNLCSKCYRDLQLNEQQSSNAKMVLNQSLVLPAPPAPVSEPSSSKTADPASAVVEEVPHATEEAKAPLQNRCMTCRRRVGLTGFKCRCGMMLCGTHRYPEQHACEFDFKGMGRDQIAKANPVVKGEKLEKI 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00577 195 PANTHER AN1-TYPE ZINC FINGER PROTEIN 48 195 - -
Vian11g00577 195 SUPERFAMILY AN1-like Zinc finger 122 190 IPR035896 -
Vian11g00577 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 51 95 - -
Vian11g00577 195 Gene3D - 39 93 - -
Vian11g00577 195 SMART A20_3 49 73 IPR002653 GO:0003677|GO:0008270
Vian11g00577 195 ProSiteProfiles Zinc finger AN1-type profile. 130 176 IPR000058 GO:0008270
Vian11g00577 195 Pfam A20-like zinc finger 50 73 IPR002653 GO:0003677|GO:0008270
Vian11g00577 195 FunFam Zinc finger AN1-type containing 6 108 191 - -
Vian11g00577 195 Pfam AN1-like Zinc finger 136 172 IPR000058 GO:0008270
Vian11g00577 195 Gene3D - 106 191 IPR035896 -
Vian11g00577 195 SMART AN1_Zf_4 136 173 IPR000058 GO:0008270
Vian11g00577 195 ProSiteProfiles Zinc finger A20-type profile. 46 80 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00577 Vian-Chr11 5857870 5859146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00577 40 195 C2H2 Transcription Factor Family AT3G52800 50.877 5.49e-48 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00577 - - gmx:100807363 275.018