Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00576 ATGGAGACAGAGTTTGAGACACCAAGGGATGTAGACGGCCACGGAACCCACATAACAGCCACAGCGGCGAGAGTCACCGTGCCCGGTGTCTCATACTACGGAGTGGCGGCGGGGACTGCCCAAGGTGGGTCCCCAGAATCACGGCTGGCGATTTACCAAGTGTGCTTCAAGTATGAATGCCCTGGCTCGGCGATTCTTGCGGCATTTGACGATGCCATTGCTGATGGGGTCGATGTGATTTCGGTGTCGATTGGTTCCATCCCTAGGTTACGATCCGAGTTGAAACACGATCCAAACGCCATTGGGGCATTCCACGCCGTGGAGCGCAGCATTTTGGTGGTTGCCTCCGCGGGAAACAGCGGACCAAACTTAAACACGGGGGTGAATGACGGTGGCGAGGCCATCGTCATCTCGATTATCGTACATGCCATCGGTGGTGACCGCAAGAAGATGTATAGCAATTTTAAGGAGCAGGCGATAGAGTACGTGAAGCAGGCCGTGCAGGAAGACAATGCTGGGAACTACGCGAAAGCGTTTCCTCTCTACATGAACGCCTTGGAGTACTTCAAGACGCATCTCAAGTACGAGAAGAACCCTAAGATCAAGGAAGCCATCACGCAGAAATTCACCGAGTACCTGCGCCGGGCCGAAGAGATTCGAGCCGTCCTCGACGATGGAGGTCCAGGCCCGGCTTCTAACGGGGACGCCGCCGTAGCCGCCAGGCCCAAGACCAAGCCCAAGGATGGTGAAGGTGGTGGCGATGGGGAGGACCCCGAGCAAGCCAAGCTTAGGGCTGGCCTCAACTCGGCCATCGTGAGGGAGAAGCCCAACGTGAAGTGGAACGACGTCGCAGGGTTGGAGAGCGCAAAGCAGGCCTTGCAGGAGGCTGTGATTTTGCCTGTGAAGTTCCCTCAGTTCTTTACTGGGAAAAGACGTCCCTGGAGAGCCTTTTTGTTGTATGGACCTCCTGGAACGGGAAAATCTTATTTAGCGAAGGCAGTTGCAACAGAAGCTGAGTCCACATTTTTCAGTGTTTCTTCATCAGACCTTGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAATCTTTTCGAAATGGCTCGAGAAAGTGCCCCATCCATCATATTCATTGATGAAATAGATTCCCTATGTGGTCAGCGTGGGGAAGGCAATGAGAGCGAAGCTTCAAGACGAATTAAAACAGAGCTTCTGGTTCAGATGCAGGGTGTAGGGCACAATGATCAGAAAGTTCTTGTTCTTGCAGCAACAAATACACCCTATGCCTTAGACCAGGCAATAAGGCGAAGATTTGATAAGCGCATATATATTCCACTACCAGATTTGAAGGCTCGCCAACACATGTTCAAGGCAAATACTCCTAATAACTTGACTGAAAGTGATTTTGAGTACTTGGCGAGCAGGACAGAGGGGTTTTCTGGTTCAGATATCTCTGTCTGTGTAAAAGATGTGTTATTTGAACCTGTTCGCAAAACCCAAGATGCAATGTTCTTCTTTAAAAATCCCGAGGGTATGTGGATCCCGTGTGGACCAAAGCAACAGGGTTCTGTACAAACCACAATGCAGGATCTTGCTACAAAAGGACTTGCTTCTAAGATCCTTCCACCTCCTATTACGAGGACAGATTTTGAGAAGGTACTCGCGAGACAAAGGCCTACAGTAAGCAAATCCGACCTTGATGTTCACGAGAGATTCACGAAGGAGTTTGGAGAGGAAGGTTAA 1746 0.5052 METEFETPRDVDGHGTHITATAARVTVPGVSYYGVAAGTAQGGSPESRLAIYQVCFKYECPGSAILAAFDDAIADGVDVISVSIGSIPRLRSELKHDPNAIGAFHAVERSILVVASAGNSGPNLNTGVNDGGEAIVISIIVHAIGGDRKKMYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVAARPKTKPKDGEGGGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEAESTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKANTPNNLTESDFEYLASRTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKNPEGMWIPCGPKQQGSVQTTMQDLATKGLASKILPPPITRTDFEKVLARQRPTVSKSDLDVHERFTKEFGEEG 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00576 581 Pfam Subtilase family 6 141 IPR000209 GO:0006508|GO:0008236
Vian11g00576 581 SUPERFAMILY MIT domain 152 231 IPR036181 -
Vian11g00576 581 Gene3D Peptidase S8/S53 domain 2 160 IPR036852 GO:0004252|GO:0006508
Vian11g00576 581 Gene3D - 276 569 IPR027417 -
Vian11g00576 581 Pfam MIT (microtubule interacting and transport) domain 157 220 IPR007330 -
Vian11g00576 581 Gene3D - 449 561 - -
Vian11g00576 581 Gene3D - 161 225 - -
Vian11g00576 581 ProSitePatterns AAA-protein family signature. 419 438 IPR003960 GO:0005524|GO:0016887
Vian11g00576 581 MobiDBLite consensus disorder prediction 223 260 - -
Vian11g00576 581 PANTHER AAA DOMAIN-CONTAINING 166 579 - -
Vian11g00576 581 MobiDBLite consensus disorder prediction 241 260 - -
Vian11g00576 581 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 271 565 IPR027417 -
Vian11g00576 581 SMART AAA_5 313 449 IPR003593 GO:0016887
Vian11g00576 581 FunFam Vacuolar protein sorting-associated protein 4 276 456 - -
Vian11g00576 581 CDD MIT_VPS4 154 227 IPR045253 -
Vian11g00576 581 SMART smart 152 229 IPR007330 -
Vian11g00576 581 FunFam vacuolar protein sorting-associated protein 4A 449 561 - -
Vian11g00576 581 CDD RecA-like_VPS4 275 445 - -
Vian11g00576 581 Pfam ATPase family associated with various cellular activities (AAA) 318 447 IPR003959 GO:0005524|GO:0016887
Vian11g00576 581 SUPERFAMILY Subtilisin-like 7 147 IPR036852 GO:0004252|GO:0006508
Vian11g00576 581 Pfam Vps4 C terminal oligomerisation domain 514 578 IPR015415 -
Vian11g00576 581 FunFam Suppressor of K+ transport growth defect 1 156 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00576 Vian-Chr11 5837270 5853652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00576 312 502 Calmodulin-binding Proteins AT3G56690 36.735 2.26e-31 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00576 K12196 - gmx:100788150 819.305