Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00563 ATGGATGTAACCATGAACAATGATGACTACTCTTTCTCTTCATCACCATCATCCACTTCTTCTCAAAGCCAACTTTGCAACCCGAATTCTCCGTCGGATAATTCATCATTCCCCGCACAAAAACCAGAGTTGAGTTCTCACAAGAGGAAAGCTGGGAGAAAGAAGTTTCGAGAAACACGGCATCCGGTGTATAGAGGAGTTCGTCAGAGAAACGGTAACAGATGGGTGTGTGAAGTTCGTGAACCCAACACGAAATCAAGGATATGGCTCGGAACATACTCCGCACCAGAAATGGCAGCTAGGGCACATGACGTGGCTGCCCTAGCACTTAAGGGCACCTCTGCAGCATTCAATTTCCCTGATTCGGTTTCTCTTCTTCCAGTTGCAAAGTCATCTTCAGCTGCAGATATTAGAGCGGCTGCAGCACAAGTTTCCGAGGTTTTTTTACCGGCCAACCCTTCTTCGTCCTTTACAAGGGTTGAAATAGAAACTAACCCTTGTTCGGTGGAGGGTGTTGTTGATTTTGCCAAGACTGTGACTAATGTTGAGGAGTCCAACGAATCAGTGTTTTTCGACGAAGAGGCAGTTTATAACATGCCAGGTTTGTTAGATAGCATGGCTGAGGGTCTTCTCATTACTCCACCTTCTATGAAGAGATTTGATTGGGACGAGGTTGATTGTGAAACAGACCTCACTCTCTGGACATATTAA 711 0.4557 MDVTMNNDDYSFSSSPSSTSSQSQLCNPNSPSDNSSFPAQKPELSSHKRKAGRKKFRETRHPVYRGVRQRNGNRWVCEVREPNTKSRIWLGTYSAPEMAARAHDVAALALKGTSAAFNFPDSVSLLPVAKSSSAADIRAAAAQVSEVFLPANPSSSFTRVEIETNPCSVEGVVDFAKTVTNVEESNESVFFDEEAVYNMPGLLDSMAEGLLITPPSMKRFDWDEVDCETDLTLWTY 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00563 236 MobiDBLite consensus disorder prediction 1 42 - -
Vian11g00563 236 SUPERFAMILY DNA-binding domain 63 122 IPR016177 GO:0003677
Vian11g00563 236 MobiDBLite consensus disorder prediction 47 61 - -
Vian11g00563 236 CDD AP2 64 122 IPR001471 GO:0003700|GO:0006355
Vian11g00563 236 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Vian11g00563 236 PRINTS Ethylene responsive element binding protein signature 86 102 IPR001471 GO:0003700|GO:0006355
Vian11g00563 236 MobiDBLite consensus disorder prediction 1 61 - -
Vian11g00563 236 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 236 IPR045277 GO:0003700
Vian11g00563 236 SMART rav1_2 63 126 IPR001471 GO:0003700|GO:0006355
Vian11g00563 236 FunFam Ethylene-responsive transcription factor 2 62 121 - -
Vian11g00563 236 Pfam AP2 domain 62 112 IPR001471 GO:0003700|GO:0006355
Vian11g00563 236 ProSiteProfiles AP2/ERF domain profile. 63 120 IPR001471 GO:0003700|GO:0006355
Vian11g00563 236 Gene3D AP2/ERF domain 63 121 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00563 Vian-Chr11 5685493 5686203 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00563 17 236 AP2-EREBP Transcription Factor Family AT4G25470 43.049 3.53e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian11g00563 AP2 8.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00563 - - vra:106758293 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00563 11 5685493 5686203 Vian11g00563 11 5685493 5686203 ECH
Vian11g00563 11 5685493 5686203 Vian5g01067 5 32426069 32426734 PCT