Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00560 ATGAATTTTGAGATTGAATATCCTTTTTCATTTCAATCTTCTTCCACCATTTTCCAATCATCATCACTCACACCACCTAATAATAATAATACTAACCCGAACCTACTTTCACATCCTTTAGTTCATGCACAATTTGTAGTTTCCCCCAAAAGGAAAGGTGGGAGAAAGAAGTTCAAGGAAACGCGCCACCCTATTTATAGGGGTGTCCGACAAAGGAAGGGAAAGTGGGTTTGTGAGCTCAGGGAACCCAAGAAGACCACAAGGATTTGGTTAGGGACATACCCTACACCTGAAATGGCAGCTAGGGCACATGATGTGGGTGCCCTAGCAATTAGGGGCACCTCAGCGATTCTAAACTTTCCAAACTCAGCTTCTTTTCTTCCAATCCTTAACTCCTCTTCACCTAAAGATATTCGAGCAGCCGCAGCAGAAGCTGCTGAGAGTTTCAGACCGATCTCGCTTTCTTCCTTGTCCAATTCTCGTAACGAGAAAACCGGTCGCAAAACTAAGTGCAGGAGGGTTTGTAAAAAGGTTTCATCAATGGAGGAAAAGACACAGACAACAGTGTTGGAGTCGTCCTTGAATAACATGCAGAATTTGGATCGTGAAAAATGTGATGTTATCACCAGTGGCATGGAGAAAAACAACTGTGATTTGTCTTCGACTGTGTTCTTCGATGAGGAGGCATTGTTTAACATGCCTGGTCTCTTGGATAGAATGGCAGAGAGTTTATGTCTTTTTCCACTACCTTCCGTAGATTATTGGGATGATCATGCTTATTTCACAGACTTCAATTTGTGGACTGATTGA 810 0.4259 MNFEIEYPFSFQSSSTIFQSSSLTPPNNNNTNPNLLSHPLVHAQFVVSPKRKGGRKKFKETRHPIYRGVRQRKGKWVCELREPKKTTRIWLGTYPTPEMAARAHDVGALAIRGTSAILNFPNSASFLPILNSSSPKDIRAAAAEAAESFRPISLSSLSNSRNEKTGRKTKCRRVCKKVSSMEEKTQTTVLESSLNNMQNLDREKCDVITSGMEKNNCDLSSTVFFDEEALFNMPGLLDRMAESLCLFPLPSVDYWDDHAYFTDFNLWTD 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00560 269 CDD AP2 64 123 IPR001471 GO:0003700|GO:0006355
Vian11g00560 269 SMART rav1_2 65 127 IPR001471 GO:0003700|GO:0006355
Vian11g00560 269 SUPERFAMILY DNA-binding domain 65 123 IPR016177 GO:0003677
Vian11g00560 269 Gene3D AP2/ERF domain 65 122 IPR036955 GO:0003700|GO:0006355
Vian11g00560 269 ProSiteProfiles AP2/ERF domain profile. 65 121 IPR001471 GO:0003700|GO:0006355
Vian11g00560 269 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Vian11g00560 269 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Vian11g00560 269 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 268 IPR045277 GO:0003700
Vian11g00560 269 Pfam AP2 domain 64 113 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00560 Vian-Chr11 5643908 5644717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00560 10 268 AP2-EREBP Transcription Factor Family AT4G25470 41.445 1.09e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian11g00560 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00560 - - vum:124831015 505.753