Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00549 ATGGAGTTTTGGGGTGCTGAGGTTAAGGTTGGGGAGTCTGTTAAGGTTGACCCAACTGAATTTGAGGCATGCATCCACCTTTCTCAGGCTGCTCTTGGTGAGGCAAAGAAAGACAAAACAAATGAGCCTGTTGTTGTGTACTTGAAGGTCGGTGAGCAGAAGTTTGTCCTGGGAACCCTGTCCAGGGAGAAAATCCCTCAAATATCCCTAGAATTGGTTCTGGAGAAGGAGTTTGAACTATCCCACAGTTCAAAGAGTGCCAGCGTACATTTCTGTGGATACAAGGCATATTACTCTGGCGATGATAGTGAAGACGATGAGTTTACTGATAGTGATGAGGATATTCCATTGCTTAACGCAGAGAATGGAAAACCTGAAAAGAAAGTTGAAGAATTGAAGGCACTTGCATCTAAAAAGCCTGATGCTAAGGCTGGTGCTGTAGCAAAAAAAGTCAAGGTTGTTGAGCCAGAGAAAGACAATGAGGATTCTGATGATGATTCTGATGAAGATGATGCTTTGGGAATTTCTGATGAAGAGATGGAGGATGCTGACAGTGATGACAGCGATGAGGAGGATGACAGTGATGAAGATGACGATGAAGAGACCCCTCCTAAAAAAGCTGATTTGGGAAAGAAGAGACCAAATGAATCTGCATCAAAAACTCCTGTCTCCTCCAAGAAAGCTAAAAATGCTACTCCTGAAAAGAAGGATGGCAAGAAAAACATAAGAGCAGAAACTCCTCAATCCGTGAAGAAAGGTGGAAAGACTCCCAGCAGTGAAGCCAAGGACAAGAGTCCCAAGTCCGGTGGACTTATTTGCAAGAGTTGCAGCAAGACTTTCAATACCGAAAGTGGTCTGCAACAACATAGCAAGGCCAAGCACGGCGGTCAGTGA 894 0.4441 MEFWGAEVKVGESVKVDPTEFEACIHLSQAALGEAKKDKTNEPVVVYLKVGEQKFVLGTLSREKIPQISLELVLEKEFELSHSSKSASVHFCGYKAYYSGDDSEDDEFTDSDEDIPLLNAENGKPEKKVEELKALASKKPDAKAGAVAKKVKVVEPEKDNEDSDDDSDEDDALGISDEEMEDADSDDSDEEDDSDEDDDEETPPKKADLGKKRPNESASKTPVSSKKAKNATPEKKDGKKNIRAETPQSVKKGGKTPSSEAKDKSPKSGGLICKSCSKTFNTESGLQQHSKAKHGGQ 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00549 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 271 297 IPR013087 -
Vian11g00549 297 MobiDBLite consensus disorder prediction 159 202 - -
Vian11g00549 297 FunFam Histone deacetylase HDT1 1 100 - -
Vian11g00549 297 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Vian11g00549 297 MobiDBLite consensus disorder prediction 272 291 - -
Vian11g00549 297 MobiDBLite consensus disorder prediction 229 246 - -
Vian11g00549 297 Gene3D Nucleoplasmin core domain 1 100 - -
Vian11g00549 297 ProSitePatterns Zinc finger C2H2 type domain signature. 273 294 IPR013087 -
Vian11g00549 297 MobiDBLite consensus disorder prediction 117 158 - -
Vian11g00549 297 MobiDBLite consensus disorder prediction 102 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00549 Vian-Chr11 5509842 5512593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00549 1 105 C2H2 Transcription Factor Family AT5G03740 50.476 9.55e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian11g00549 NPL 1.5e-14 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00549 - - gmx:100792094 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00549 11 5509842 5512593 Vian11g00549 11 5509842 5512593 ECH