Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00543 ATGGGAAGTAAGGTCAGCGACCACCACCTGTCCACCGTGAGATCCATCGTGGGTTCAGAATTCTCCGACATGGAAATCATCAGAGCCCTCCACATGGCCAAAAACGACGTCAATGCGGCCATCAACATCATCTTGGACACTCACACCGCCCCAAGATTCAATCCCACCCGCCCCAATAATCAACTTTCAGTCTCTCCTCCAAAACCCTCCCCTTCCACTCCTATCGTCACCAAGCCTAGCTTCAGTGAACAACGCATTGATAATAACAGTGATGATTGGTGGTTGGTGAATTGCGGTGAAATGACGGGTTTGTCCACGTGTAAAGGGAGGAGTATAAATTCCGGTGAGACTGTGATTTTCAAGTTTCCGACAAAGAAATTATCCTCCCCCTTTACAGGAAAGGGGTTTGGACGGGCTGCGGCGTGTTCGGAGATAGTTCGGTTTTCTACTGAACAAGCTGGGGAGATTGGTAGAATACCAAAGGAATGGGCTCGGTGTCTTTTGCCTCTCGTGCGAGATCATAAGGTTAGGATTGAGGGAAACTGTAAATTTGCTCCTCAAGTTTTGGGCATCATGGACTCTATTATTTTGTCAGTAAGTGTATTTATCAATAGTTCAATGTTTGCTAAGCATCACCAGGTTTCTCTCAAGGATGCTGCCAACTCGACGGATGAATCTGTGTTTCATCCGCTGCCAACACTGTTTCGGTTGCTGGGTTTAAACCCTTTTAAAGAGGCAGAGTTAACTCCAGGCGATTTCTATTCCAACAAGCGTCCTCTCAGTGAAAAGATATATTCTCTCCAGGTAACATTACCACGTGCCAAGTTTGAGCATCCTTCTCAAAATGGCAATGAAAACGACAATGAGGAATCTATTTCTGAAATTGAGGTTGAGAATATTGTTGGTGTTGGATCAAGTGAAGAGTTAGAGGAAATGGACCCCCCTGCTAATCTTCAGTGCAATCTACGACCTTATCAAAAGCAGGCACTTTATTGGATGATCCAGATGGAGAAGGGAAAATGCATGGATGAGACTGCAACAACCCTCCATCCATGTTGGGAGGCATATCACCTTGCTGACAAGTATGCCAGTGGAAAGGGTGAATCAGTAGGCAATCAACCCATAGCCAAGTCCTTTACTGAAGTTGGTGAAGTTAGTGATAATGTGCACACTTTTTCAAACATACCCAAGAAAGCAACCAAATTTTCGGGTTTTGATAAGCCAACAAAGCAAATGAACTCTCTAACAAGTGGTGGCAACTTGATAATATGTCCGATGACTCTTCTTGGGCAATGGAAGGCTGAGATTGAAACTCACGTGCACCTTGGATCTCTGTCTCTATATGTTCACTACGGACAAAGTAGGCCAAAAGATGCAAAAAGTCTCGCTCATAATGATGTTGTAATTACTACATATGGAATTTTGGCCTCTGAATTTTCCAGTGAGGTAAAGTTTGATCAGTTTGTTGAGCAAGGACGTGTTCTTCATAATTACGCTTCAATATTGGAGTTACTTCTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGTCGAGGTGATACTCAAGATTTCGCGGATCTAAACAAACTAGCTAAACGCTTCCTTAGAGGAACATATAATGCTTTGGATGGTGAAGTAAAAGAGGCACCTTCACGGGCTTATGTTCAAGAAGTCGTGGAGGAGCTACGTAAAGGGGAGCAAGGAGAATGTCCAATATGCCTTGAAGCATTTGAAGATGCAGTGTTGACCCCTTGCGCTCACCGCTTATGCAGGGAATGCCTCTTGGCAAGTTTGCGAAATGCTACTTCTGGCGTATGTCCTGTTTGTAGGAAAGCAGTCAACAGGCAGGATCTAATCACTGCCCCTACTGAGAATCGGTTTCAGGTGGATATTGAGAAGAACTGGGTAGAGTCATGCAAGGTAACTGCTCTTTTGAATGAACTTCAAAATCTTCGCTCATCAGGCTCCAAAAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTGGACCTCTTGCAGATCCCCTTCGCTCGGAATAACATTTCATTTGTTCGTCTTGATGGAACTCTGAATCTGCAGCAGCGGGAGAAAGTAATCAAGCAATTTTCAGAGGACAGCACGACTCTGGGGACCGTCGAGGAGAGAATGGAAGCAGTACAAGCACGTAAACAACGAATGATTTCTGGTGCCTTGACTGATCAAGAGGTTCGAAGTGCGCGCATTGAGGAGTTAAAGATGCTTTTTACTTAG 2256 0.445 MGSKVSDHHLSTVRSIVGSEFSDMEIIRALHMAKNDVNAAINIILDTHTAPRFNPTRPNNQLSVSPPKPSPSTPIVTKPSFSEQRIDNNSDDWWLVNCGEMTGLSTCKGRSINSGETVIFKFPTKKLSSPFTGKGFGRAAACSEIVRFSTEQAGEIGRIPKEWARCLLPLVRDHKVRIEGNCKFAPQVLGIMDSIILSVSVFINSSMFAKHHQVSLKDAANSTDESVFHPLPTLFRLLGLNPFKEAELTPGDFYSNKRPLSEKIYSLQVTLPRAKFEHPSQNGNENDNEESISEIEVENIVGVGSSEELEEMDPPANLQCNLRPYQKQALYWMIQMEKGKCMDETATTLHPCWEAYHLADKYASGKGESVGNQPIAKSFTEVGEVSDNVHTFSNIPKKATKFSGFDKPTKQMNSLTSGGNLIICPMTLLGQWKAEIETHVHLGSLSLYVHYGQSRPKDAKSLAHNDVVITTYGILASEFSSEVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQDFADLNKLAKRFLRGTYNALDGEVKEAPSRAYVQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASLRNATSGVCPVCRKAVNRQDLITAPTENRFQVDIEKNWVESCKVTALLNELQNLRSSGSKSIVFSQWTAFLDLLQIPFARNNISFVRLDGTLNLQQREKVIKQFSEDSTTLGTVEERMEAVQARKQRMISGALTDQEVRSARIEELKMLFT 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00543 751 ProSitePatterns Zinc finger RING-type signature. 588 597 IPR017907 -
Vian11g00543 751 SMART HIRAN_2 96 203 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vian11g00543 751 Pfam HIRAN domain 100 199 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vian11g00543 751 SMART ring_2 573 612 IPR001841 -
Vian11g00543 751 Pfam SNF2-related domain 325 482 IPR000330 GO:0005524|GO:0140658
Vian11g00543 751 Pfam Helicase conserved C-terminal domain 643 708 IPR001650 -
Vian11g00543 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 483 737 IPR027417 -
Vian11g00543 751 ProSiteProfiles Zinc finger RING-type profile. 573 613 IPR001841 -
Vian11g00543 751 MobiDBLite consensus disorder prediction 51 77 - -
Vian11g00543 751 Pfam Zinc finger, C3HC4 type (RING finger) 570 617 - -
Vian11g00543 751 CDD SF2_C_SNF 639 708 - -
Vian11g00543 751 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 478 709 - -
Vian11g00543 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 309 481 IPR027417 -
Vian11g00543 751 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 554 621 IPR013083 -
Vian11g00543 751 Gene3D - 400 497 IPR038718 -
Vian11g00543 751 SUPERFAMILY RING/U-box 560 619 - -
Vian11g00543 751 Gene3D - 622 711 IPR027417 -
Vian11g00543 751 MobiDBLite consensus disorder prediction 275 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00543 Vian-Chr11 5459392 5471825 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00543 695 751 RAD5 or RAD16-like Gene Family AT5G22750 77.193 1.49e-16 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vian11g00543 SNF2_N 6e-13 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00543 K15505 - gmx:100794452 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00543 11 5459392 5471825 Vian11g00543 11 5459392 5471825 ECH