Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00534 ATGGCGGAGGACCGGAGTGAGGTGAGTGATTACAGTTCGGAGGACGAAGGAACTGAAGATTACAGGCGCGGAGGGTACCATGCGGTTCGAATTGGTGACACTTTCAAGAATGGGTGCTATGTGGTACAGAGCAAGCTTGGTTGGGGTCATTTTTCCACTGTGTGGCTCGCTTGGGACACTAACAAATCGCGATATGTTGCCTTAAAAATTCAAAAGAGTGCTCAGCATTACACTGAGGCGGCAATGGACGAGATAAAGATTCTCAAACAAATTGCTGATGGGGATCCAGATGACAAAAAATGTGTTGTAAAGCTTCTGGATAACTTTAAGCATTCAGGGCCTAATGGCCAGCATGTTTGTATGGTTTTTGAATTCCTTGGTGATAATCTTCTTACCCTTATCAAGTATAGTGATTACCGAGGTGTTTCGCTTCCTGTGGTCAAGGAAATTTGTTTCCATATTTTGGTGGGTTTGGATTACTTGCACCGTGAGCTTTCTGTAATACACACTGATTTGAAGCCTGAGAATGTCCTGCTTCTGTCTCCCATAGATCCATCTAAGGATCCTAGAAAATCAGGTGTTCCACTTATCCTTCCAAACACGAAGGATAAGGCTGTGACAAAAAATGGGATAACAATAGCCAATAAGAATGTTAATGGAGATCTAACCAAGAACCAGAAAAAGAAATTACGAAAAAAGGCTAAAAAGTTAGCCCAGGGCTGTGTTGGAAGGGAGCATGCCGAGGAAGCTGAGGAGGATTCTAAAGCACCTGATGAGCAAGATGATTGTAGTACTGATGTGAAGCCAAGTGTAGAATTTGGTGACAATAAACCTAATAGCCCTGGTAGTAAAGATGAATCATCAAAGACTTCTGAAAATAAGGATGTTCCCCAAGGAAGTCATGGGCACAGGAGAGGTAGCCGCTCTACAAGAAAGAAGTTGCTTGCATCTGTCGATCTTAAGTGCAAGCTAGTTGATTTTGGTAATGCTTGTTGGACCTATAAACAATTCACAAATGATATTCAGACAAGGCAGTATAGGTGTCCTGAAGTTCTTCTTGGATCTAAATATTCAACCCCAGCTGACCTTTGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCAGCGGAGATGTTCTTTTTGATCCTCATAGTGGTGACAACTATGACAGGGATGAGGATCATCTAGCACTGATGATGGAGCTTCTTGGGATGATGCCTCGCAAGATTGCACTTGGTGGCCGCTATTCCCGTGATTTTTTCAACAGATATGGCGATTTGAGACACATCCGGCGATTGCGTTTCTGGCCTCTTAATAAGGTGATGATGGAGAAGTATGATTTCAGTGAAGAAGATGCTAATGGCATGGCTGAGTTCCTTCTTCCATTACTTGATTTTGTCCCTGAAAAGAGGCCAACCGCTGCACAATGCCTTCAGCATTCATGGTTCAGTGCTGGTCCCCGGACTCTTGAGCCCTCAGTAACTACTTCACAGCATGCTGCAATTGACGGGGAAATATCTGAAAAGATGCAGAGGGAAAAAGAGCAGGAGGGTGTGGAAGTTGGTATGGGGAATATGGCCATAGATGGAAATTCAAAACAACTCTAA 1605 0.4368 MAEDRSEVSDYSSEDEGTEDYRRGGYHAVRIGDTFKNGCYVVQSKLGWGHFSTVWLAWDTNKSRYVALKIQKSAQHYTEAAMDEIKILKQIADGDPDDKKCVVKLLDNFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGVSLPVVKEICFHILVGLDYLHRELSVIHTDLKPENVLLLSPIDPSKDPRKSGVPLILPNTKDKAVTKNGITIANKNVNGDLTKNQKKKLRKKAKKLAQGCVGREHAEEAEEDSKAPDEQDDCSTDVKPSVEFGDNKPNSPGSKDESSKTSENKDVPQGSHGHRRGSRSTRKKLLASVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELASGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVMMEKYDFSEEDANGMAEFLLPLLDFVPEKRPTAAQCLQHSWFSAGPRTLEPSVTTSQHAAIDGEISEKMQREKEQEGVEVGMGNMAIDGNSKQL 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00534 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Vian11g00534 534 Gene3D Phosphorylase Kinase; domain 1 16 122 - -
Vian11g00534 534 CDD STKc_SRPK 29 482 - -
Vian11g00534 534 Gene3D Transferase(Phosphotransferase) domain 1 123 483 - -
Vian11g00534 534 FunFam CMGC/SRPK protein kinase 26 125 - -
Vian11g00534 534 MobiDBLite consensus disorder prediction 238 253 - -
Vian11g00534 534 ProSiteProfiles Protein kinase domain profile. 40 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g00534 534 FunFam Serine/threonine-protein kinase SRPK-like protein 312 482 - -
Vian11g00534 534 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Vian11g00534 534 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 10 504 - -
Vian11g00534 534 SMART serkin_6 40 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g00534 534 SUPERFAMILY Protein kinase-like (PK-like) 35 493 IPR011009 -
Vian11g00534 534 MobiDBLite consensus disorder prediction 224 311 - -
Vian11g00534 534 MobiDBLite consensus disorder prediction 287 302 - -
Vian11g00534 534 Pfam Protein kinase domain 317 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian11g00534 534 Pfam Protein kinase domain 40 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00534 Vian-Chr11 5366749 5370005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00534 6 533 EF-hand Containing Proteins AT5G22840 66.604 0.0 725
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Vian11g00534 Pkinase 1.8e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00534 K08832 - gmx:100791829 983.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00534 11 5366749 5370005 Vian11g00534 11 5366749 5370005 ECH
Vian11g00534 11 5366749 5370005 Vian5g01093 5 32868692 32872480 PCT