Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00530 ATGGCGGTTGCGGGTGTGCATAATGTGACTGCGCTCGAATCTACTTTCCTGAGGGAATCCCTTTCTCAGTCACCTGGGAGGCAAGGAGATGGAGGGATGGGAGGCACCCGGTCGTCTTCGGTCATGCAAATGTGGAGAGAGATTGAGGATGAGCAGGCAGTAAGACCAGTTCAAGGAAGACCTGGGGAGGTTTTACTTCAACAAACGAGTGATGAGGTGGTTGTGGACTCCTCGCAGGAAAATATGCCATATAGCAACCAGAGAGAAGGACGTGTGATAGAAGATGCAGGTTTGGGAGAGAATGATTCTGAGACCTGGTCACAAAGTCAGAATGAGTTCCATGACGAACAAGAGGAATTGAATAATTCTAGCCACGAAAACTCCTCTGATTTTGGAGAAGTTGAAAGGGAAAGAGTGAGGCAAATATTCAGGGAGTGGATGAATAGTGGTTCTAGGGATCGTGCATCGAATAATTCCCAAGGAAACAGAGGAGAATGGCGCGGGGAAACTGAGCAGGAAAGGGGCGGGGAAACTGATCAGGAAGGAGTGAGTATCATAAGGGAGTGGGTGCAGACGAGTAGCCCACAGAGAGGTGTTTCTTCTGGGGAAAATAGGGAAGAACAATCTTCTGAAACTGGTACCCAAATTGAATGTGTTCGTGATGGATTTATTAATCAGAACGACGGTCAAGCTGAGCATGCACGGAGGGGAATCCGTAAATTATGTGGCCGACAGGTGCTGCTTGATATGCTTAAGAAGGCCCAGATGGAAAGACAAAGAGAAGTTCAGGAATTGTTGGACCATCGGGTTGTATCTCATTTCCCCCATCGTAATCGTATTCAGGCCTTGCTTAGAGGCAGGTTCTTGAGAAATGATAGATCGATTGGTAATAACAGGTCCACTTCCATTGCAGAAAGTGAATTAGGCTTATTGAGACAGAAGCAGACTGTATCAGGTCTAAGAGAAGGATTCTTTTTCAGAAAGGACAGTTTTGGTTGCAGTCAAGCAACCAGTAACCTATCTGATACCTCTTCCGAGAGTGATATTGATGTTAATGCAATTGAACAAACTGGAGCTAGCAGTTCACAAGCCGTTCCAACTGTACATTCTGAACAATCCCGGCCTATTAACAATGGAAGTGACGGACTTGAGATACCATGTGATCAGATCTGTTCACAAGGAACCCCTTGTGAGAAATTAGACTGGCAAGGCTCTGCCGCTCATATAGAAACAATTGATCGGGAATCATCTTCCAGTATCAGAGTTGAAAGAGGAGATGACACTGGACAAACTGTTGCTACGATGCCAGCTGAAGATTCTTCTAATGACCTTTCCCAACAAAGTTTGCAAATTGAAGATATAGAGGATGACAACATACAAGAGTTAAGCGAGGTACCTACTGAGCAATCTCAGTGGGGAGATATAACTAATGACGAAAGCAATTTATCAAATCAGGATGATCGTGTATATAGCAATATCGTTGGTGATGTGAATTTGATTGAATCTATTGCTCTGGAAGTAGAACAACAGGAAGAAGTTATTATTGAAAATGACGGAAGTGACTGGCATCAAAGTGTGGATGTTCATCAGCTCAGTAATACTACAAATGAATGGCCCCAAAACATATTGGGTAGCGAAGATGGAGAAAATTCTCGTATGCAAGAGCAAGAAGCCCCTGAAGCGTGGCAAGAGGATGGTGGCTTTCAAGAGGCTGTGGAAATTTGGTTAGGAGGACCTTCTGATAATGAAGTAGCTCCAGTTGGTAGAATTCATGGGTTTTATTTTCCCGAAGATGACAATGTGTATAGCGTTGAACTCAGGGAATTGCTAAGTAGGAGAAGTGTCTCAAACCTCCTTCGCAGCAGTTTTCGTGAAAGTCTTGACCAGTTGATACAGTCGTATGTTGAAAGGCAAGGTAACGCTCATGTTGAATGGGAACTGCAAGAAACAACCCCTTCTTCTCCCTTGGCAGAACAAGACTCTGGACAAGAGACTAGGGATCCAGTTGTTGGTCCTCAGGGTACTGTTAATAGCTCACTTGACCACCGTCCCTTGCCACCAACACCTCCGCCTCAGCCTTTATGGGATCGGCACTCTCGCCATGACAATTGGTCACAGAGTGACATAAATAATCAGCGCCTAGGAATTGAGTGGGATATTGTTAATGACTTAAGAATTGACATGGTTAGGCTACAGCAAAGGATGAATAATATGCAAAGAATGCTGGAAGCCTGTATGGATATGCAGCTTGAGTTACAACGCTCAATAAGACAAGAAGTCTCTGCAGCCTTAAATCGCTCAACTGGTTCATCAGGAACACATGAGCGTGTCTCACCAGAGGATAAATCTAAATGGGAATGTGTGAGGAAAGGAGTTTGTTGTATATGCTGTGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCATATGTGCACATGTTCAAAATGTGCAAATGATTTGCACCAAAGTAGAAGAAAGTGTCCAATGTGTCAAGCACCAGTGGTGGAAGTGATACGTGCTTATTCTATACAATAG 2538 0.4413 MAVAGVHNVTALESTFLRESLSQSPGRQGDGGMGGTRSSSVMQMWREIEDEQAVRPVQGRPGEVLLQQTSDEVVVDSSQENMPYSNQREGRVIEDAGLGENDSETWSQSQNEFHDEQEELNNSSHENSSDFGEVERERVRQIFREWMNSGSRDRASNNSQGNRGEWRGETEQERGGETDQEGVSIIREWVQTSSPQRGVSSGENREEQSSETGTQIECVRDGFINQNDGQAEHARRGIRKLCGRQVLLDMLKKAQMERQREVQELLDHRVVSHFPHRNRIQALLRGRFLRNDRSIGNNRSTSIAESELGLLRQKQTVSGLREGFFFRKDSFGCSQATSNLSDTSSESDIDVNAIEQTGASSSQAVPTVHSEQSRPINNGSDGLEIPCDQICSQGTPCEKLDWQGSAAHIETIDRESSSSIRVERGDDTGQTVATMPAEDSSNDLSQQSLQIEDIEDDNIQELSEVPTEQSQWGDITNDESNLSNQDDRVYSNIVGDVNLIESIALEVEQQEEVIIENDGSDWHQSVDVHQLSNTTNEWPQNILGSEDGENSRMQEQEAPEAWQEDGGFQEAVEIWLGGPSDNEVAPVGRIHGFYFPEDDNVYSVELRELLSRRSVSNLLRSSFRESLDQLIQSYVERQGNAHVEWELQETTPSSPLAEQDSGQETRDPVVGPQGTVNSSLDHRPLPPTPPPQPLWDRHSRHDNWSQSDINNQRLGIEWDIVNDLRIDMVRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTGSSGTHERVSPEDKSKWECVRKGVCCICCESNIDSLLYRCGHMCTCSKCANDLHQSRRKCPMCQAPVVEVIRAYSIQ 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00530 845 MobiDBLite consensus disorder prediction 109 135 - -
Vian11g00530 845 Pfam Zinc finger, C3HC4 type (RING finger) 791 837 - -
Vian11g00530 845 ProSiteProfiles Zinc finger RING-type profile. 793 832 IPR001841 -
Vian11g00530 845 MobiDBLite consensus disorder prediction 649 703 - -
Vian11g00530 845 MobiDBLite consensus disorder prediction 70 86 - -
Vian11g00530 845 MobiDBLite consensus disorder prediction 147 216 - -
Vian11g00530 845 MobiDBLite consensus disorder prediction 185 216 - -
Vian11g00530 845 Coils Coil 437 457 - -
Vian11g00530 845 CDD mRING-HC-C3HC5_NEU1 793 842 - -
Vian11g00530 845 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 845 - -
Vian11g00530 845 SUPERFAMILY RING/U-box 792 838 - -
Vian11g00530 845 MobiDBLite consensus disorder prediction 649 682 - -
Vian11g00530 845 MobiDBLite consensus disorder prediction 150 165 - -
Vian11g00530 845 MobiDBLite consensus disorder prediction 166 181 - -
Vian11g00530 845 Coils Coil 721 748 - -
Vian11g00530 845 MobiDBLite consensus disorder prediction 358 377 - -
Vian11g00530 845 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 770 843 IPR013083 -
Vian11g00530 845 MobiDBLite consensus disorder prediction 13 40 - -
Vian11g00530 845 MobiDBLite consensus disorder prediction 69 135 - -
Vian11g00530 845 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00530 Vian-Chr11 5293749 5298093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00530 793 839 C3H Transcription Factor Family AT3G06140 38.298 4.27e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00530 - - var:108334224 1346.26