Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00528 ATGGCCAAGGGCACCGATTCCGACGAGTTCGTGTTGCTTTCTAGGGTTCGGACTGGTCTCAAGAGGGAGTTCGCGTTCGCAATGAAGGCCCAATCTGAGATCTGCGGCGCTTCTCTGGGCCGAACGCGGGCCAGCAAGAACCGGCCTGACCCTCCTGTTCAGACGGCATCTGCCCGGAAACGGTCCAGGAAGACCGTCGAGCCGAAAACGTCGGAGGACGTCTTGAGCGAGGAAGAGGCTAAGAGCGACGTGGTGGATCTTCAGAGCGATGATGAGCCGAAGAATAATCATGCGGGAGAGTCAGAGTCTCCGGCAATGTTGGTTTGTGAAGAGGAAACGAAGAGTGATGTGGCCATGGAAAATATTATGGGCGAAGAGGAGCCGAAGGTGTTGGAAACTGTTATCTGCGAAGAGGAGCCTAAGGTGTTGGAAACTGTTATCTGCGAAGAGGAGCCTAAGGTGTTGGAAACTGTTATCTGCGAAGAGGAGCCTAAGGTGTTGGAAACTGTTATCTGCGAAGAGGAGCCGAAGGTGTTGGAAACTGTTATCAGCGAGGAGGAACCGAAGGCGTTAGAAATTGTCGTGTGCGAAGAGGAACCGAAGGTGTTGGATAGTGGTGTCAATGAGGAGGAGCCTGTTGTGGCTGAGACGTTGAAGGAAGAGGTTGTGGATGAGACGGCACAACCTCTTGGCGAAATTAATGAGGAATCGGAGAAGGGTGTTTCGGGAGATAAGGTTCCTGGTGGGGAAACCCTTGTTTTGGAGAATGATGATGATAAGGGGAAGAAGTATAAGAAGAGAACGAAAAAGTGGATGGAGAGGCTTCCGACTGTGAGAAGGTTTACGCGGTCGGCATTGAAGGAAAAACCCGAGGAAGCAAATGACGAGAAAAATGTTGGTGCGGTTGGAGTTGATGATGTTATTAAGAGGGAATCAGAAACTGAGGCTTCGGTGTTAATGACCACTCCTATTTCGGGAAGATTTTCGAATTCTAGGTTGAGGAAATTTCCTTCCAAGTTGAAGGATCTTCTGGCTACGGGCATTCTTGACGGATTGACAGTGAGGTACATGAAAGGATCAAAGGCTCGAAAGAATGGAGAAACAGCGCTTCAAGGAATGATTCGAAACTCTGGGATTCTGTGCTTTTGTGAGAGTTGCATGGGGATTGAGGTGGTCACGCCCACTGTGTTTGAGCTGCATGCTGGCAGTGCAAATAAACGTCCCCCGGAGTATATTTACATGGATTGTGGGAATGGTGGAAATAACCTCCGTGATGTCATGAATGCCTGCTGCGATTTGCCATTGGAGTCAGTGGAGGAAGCCGTCCAAAAACTACTTGGTGGCTTCACTATGAACAAATCTTCGATCTGTTTACACTGCCGAGGAGCATGCAAGGGTGTGTCAAAGCTCGTATGCGATTGTTGCTTAGCAAGTCCCCCTCAAATAGCCACAGCATGTAGCAAAAAGATTTCATCACCGGTTCAGCCAAGATCACCAGAGCAAGTAATGGTTCAAAAATCATTAGACAATGAGATGCAGCCAAATTCATTAGACAATGGCGTGCAGCCAGACTCGCTAAATAATTGCTTGGCGCCAAACTCATTAACCAATGAGATGAAGCCAAATTTGTTACATAGTGGGATGAAGCTTAATTCATCAAACAGTGTGATGAAGCCAAATTCATTAAAGAATGGGATGAAGCACAGTGCATCTCGTGGTAAGAGTCAGGGAAGACTAACTAGGAAGGATCTGCGCTTGCATAAGTTGGTATTTGAAGCAGATGTTTTGCCTGATGGAACTGAAGTAGCCTACTATGCTCATGGAGAGAAACTGTTGGTTGGTTACAAAAAGGGATATGCGATATTTTGTACCTGCTGCAACAGTGAGGTCAGTGCTTCTCAGTTTGAAGCTCATGCTGGTTGGGCATCTCGACGAAAGCCTTACCTGCACATTTACACATCTAATGGAATCTCACTCCATGAGTTGTCCATCTCTTTATCAAAAGACCGGAGATTTTCCAACAATGATAATGATGATCTCTGCATCATATGTGAAGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCTAGAGCTTTTCACATAGACTGTGTCCCTTTGCCATGCATTCCCAGTGGTACTTGGTATTGTAAGTATTGCCAGAATGTTTTTCAGAAAGATAGGCAGGGGCAACATAATGTGAATGCTCTGGCAGCTGGAAGGATTGAAGGCACTGATATTTTGGAACAGATGAACCCAAGATGTATTCGTGTTGTCAGAACTGTAGAAGTTGACCATGGTGGATGTGCCTTGTGCAGTCGTCACAATTTCAGTAAAAGCTTTGGTCCTCGGACAGTAATTATTTGTGATCAGTGTGAGAAAGAATATCATGTTGGATGCTTGAAGGATCATAATATGCAGAACCTTGAGGAATTGCCTGAGGGGAATTGGTTTTGTGGCACATCTTGCAATCAAATTCATTCTGCTCTGGCGGATTTGGCAGCTTGTGGGGAAAAGAGTGTCCCAGATTCCCTTCTAAGTTTGATTAAAAAGAAGCATGAAGAGAAAAGTGTAGACATTCAAGGTGACCTTGATGTTAAATGGAGGGTTATAAATTGGAAGCTTGATGATTCTGTCGAGAATAGGAAAAGGCTTTCAAAGGCTGTTGCTATCTTCCATGAAAGGTTTGATCCTATAGTTGATTCAACATCGGGCCGAGATTTCATTCCGACAATGTTGTTTGGAAGGAACATTCGGGGTCAAGACTTTAGTGGGATGTACTGTGCAGTGCTTACTGTCAATGGAGATATTGTGTGCGCTGGAGTATTTCGTGTCTTTGGGTCAGAAATTGCTGAGCTTCCATTGGTGGCAACAACTTCTGATCAACAAGGACAGGGTTATTTTCAGTGTCTATTTTCTTGTATCGAGACATTACTTGGTTCTTTGAATGTGAAAAACCTTGTCCTACCAGCTGCCGATGAAGCTGAATCGATATGGACCGGTAAATTTGGGTTTACAAAGCTAGCTCAAGATGAGATAAACAAGTATAAGAAATTTTATCGCATGATGATATTTCAAGGGACGTCGGTGTTACATAAGCCTGTTCCTGCGCTCTGA 3117 0.4543 MAKGTDSDEFVLLSRVRTGLKREFAFAMKAQSEICGASLGRTRASKNRPDPPVQTASARKRSRKTVEPKTSEDVLSEEEAKSDVVDLQSDDEPKNNHAGESESPAMLVCEEETKSDVAMENIMGEEEPKVLETVICEEEPKVLETVICEEEPKVLETVICEEEPKVLETVICEEEPKVLETVISEEEPKALEIVVCEEEPKVLDSGVNEEEPVVAETLKEEVVDETAQPLGEINEESEKGVSGDKVPGGETLVLENDDDKGKKYKKRTKKWMERLPTVRRFTRSALKEKPEEANDEKNVGAVGVDDVIKRESETEASVLMTTPISGRFSNSRLRKFPSKLKDLLATGILDGLTVRYMKGSKARKNGETALQGMIRNSGILCFCESCMGIEVVTPTVFELHAGSANKRPPEYIYMDCGNGGNNLRDVMNACCDLPLESVEEAVQKLLGGFTMNKSSICLHCRGACKGVSKLVCDCCLASPPQIATACSKKISSPVQPRSPEQVMVQKSLDNEMQPNSLDNGVQPDSLNNCLAPNSLTNEMKPNLLHSGMKLNSSNSVMKPNSLKNGMKHSASRGKSQGRLTRKDLRLHKLVFEADVLPDGTEVAYYAHGEKLLVGYKKGYAIFCTCCNSEVSASQFEAHAGWASRRKPYLHIYTSNGISLHELSISLSKDRRFSNNDNDDLCIICEDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCQNVFQKDRQGQHNVNALAAGRIEGTDILEQMNPRCIRVVRTVEVDHGGCALCSRHNFSKSFGPRTVIICDQCEKEYHVGCLKDHNMQNLEELPEGNWFCGTSCNQIHSALADLAACGEKSVPDSLLSLIKKKHEEKSVDIQGDLDVKWRVINWKLDDSVENRKRLSKAVAIFHERFDPIVDSTSGRDFIPTMLFGRNIRGQDFSGMYCAVLTVNGDIVCAGVFRVFGSEIAELPLVATTSDQQGQGYFQCLFSCIETLLGSLNVKNLVLPAADEAESIWTGKFGFTKLAQDEINKYKKFYRMMIFQGTSVLHKPVPAL 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00528 1038 SUPERFAMILY FYVE/PHD zinc finger 668 722 IPR011011 -
Vian11g00528 1038 Pfam Tify domain binding domain 372 430 IPR032308 -
Vian11g00528 1038 Pfam Tify domain binding domain 615 662 IPR032308 -
Vian11g00528 1038 MobiDBLite consensus disorder prediction 60 98 - -
Vian11g00528 1038 MobiDBLite consensus disorder prediction 37 105 - -
Vian11g00528 1038 MobiDBLite consensus disorder prediction 233 259 - -
Vian11g00528 1038 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 924 1008 IPR016181 -
Vian11g00528 1038 SUPERFAMILY FYVE/PHD zinc finger 762 820 IPR011011 -
Vian11g00528 1038 SMART PHD_3 768 824 IPR001965 -
Vian11g00528 1038 SMART PHD_3 680 721 IPR001965 -
Vian11g00528 1038 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 763 826 IPR013083 -
Vian11g00528 1038 PANTHER AUTOIMMUNE REGULATOR 67 1035 - -
Vian11g00528 1038 ProSiteProfiles Zinc finger PHD-type profile. 678 723 IPR019787 -
Vian11g00528 1038 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 672 738 IPR013083 -
Vian11g00528 1038 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 667 744 - -
Vian11g00528 1038 Gene3D - 864 1033 - -
Vian11g00528 1038 CDD PHD1_AIRE 680 720 - -
Vian11g00528 1038 ProSitePatterns Zinc finger PHD-type signature. 681 720 IPR019786 -
Vian11g00528 1038 FunFam PHD finger family protein 865 1034 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00528 Vian-Chr11 5255835 5262706 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00528 261 1035 PHD Transcription Factor Family AT2G36720 43.494 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00528 - - var:108333944 2009.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00528 11 5255835 5262706 Vian11g00528 11 5255835 5262706 ECH