Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00526 ATGATTTCAAGGGGCACATCTAGCTTCCAAAATCATCAAGGGCTTGAGATGTTCCCTGACCATGAAGATTTGGTGTCACCCTCTGTGGAATCTGGCTCAGTTTCACACTCCAGTACCCTCCTCTTCAATCTCTCTATTCTCAAGGACAAGGTGAGTGAGGTGCAGGCCCTAGTAGGTGTTATTCTCTCCCCAAATGAAACCCTGCCCGAGTCAACTTCCATGGCCATATCCAGCATGAACTCCACAATCCAAGAAATCCTAGTCACTGCCTCATCAATGATGTTCGCCTGCCAACAGATGGCTCTCACAACAACCCCTCCAGGTACCAATAATAACACCACTACATGCACCCACAAATTGCACCAGCCCAACAAGTTATTGCCTCACTCAAATTTTGGCACAAATAGAAGTCTGCTTGGTAACATAGCCATAGATATCAGTGACCATCATCAGGGTTGTTTATTTTCTAGCACTGAGTCAGAGGCACTGGACTGGTTTAGTGAAAGCTATAACAACAATAACGACGATAATAGCAATAGCAATATTAGTAAGACTAAGGAAGACGATCCAGGCGTTGTAATTGGTGAAAACAACATGATTATTACTAGAGGTGGAGCTCCAAGGGAAGAACGTGAACTTAACGAAGAAGGGTATAGTCATAGAGGGATTTCACCGAAGAATAGTGATGTAATTGAATTGGATGCTGCGGATTTGTTGGCTAAGTACACGCACTATTGCCAAGTTTGTGGCAAAGGGTTCAAGCGTGATGCGAATTTGAGGATGCACATGAGGGCTCATGGGGATGAGTACAAGACCAATGCTGCATTGAGCAACCCAATTAAGAATAAAGGGAAGTTGGAAGGGGAAAGCGAGCTTTTGATGAGTGTGAAGCCAAAGAGATATTCTTGTCCTCAAGAAGGGTGTAGGTGGAACCAAAAGCACGCCAAGTTCCAGCCATTGAAGTCGATGATTTGTGCTAAGAATCATTACAAGAGAAGCCATTGCCCCAAAATGTATGTGTGCAAGAGATGCAACCAGAAACAGTTCTCTGTGCTCTCTGATCTTAGGACACATGAGAAGCACTGCGGGGATCTCAAGTGGCAGTGCTCGTGTGGCACTTCCTTTTCTAGGAAAGACAAACTCATGGGCCATGTTTCTTTGTTCCTCGGACACCAACCAGCTATCAACAATGTTGGTCTCTCGTCATACTCTGGGAAATTGGAGCACCACACATTGCAAATGCAGATTGATGCTACCTCAAGATGA 1266 0.4487 MISRGTSSFQNHQGLEMFPDHEDLVSPSVESGSVSHSSTLLFNLSILKDKVSEVQALVGVILSPNETLPESTSMAISSMNSTIQEILVTASSMMFACQQMALTTTPPGTNNNTTTCTHKLHQPNKLLPHSNFGTNRSLLGNIAIDISDHHQGCLFSSTESEALDWFSESYNNNNDDNSNSNISKTKEDDPGVVIGENNMIITRGGAPREERELNEEGYSHRGISPKNSDVIELDAADLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTNAALSNPIKNKGKLEGESELLMSVKPKRYSCPQEGCRWNQKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTSFSRKDKLMGHVSLFLGHQPAINNVGLSSYSGKLEHHTLQMQIDATSR 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00526 421 Gene3D Classic Zinc Finger 238 302 - -
Vian11g00526 421 ProSiteProfiles Zinc finger C2H2 type domain profile. 244 271 IPR013087 -
Vian11g00526 421 ProSitePatterns Zinc finger C2H2 type domain signature. 246 266 IPR013087 -
Vian11g00526 421 Gene3D Classic Zinc Finger 337 387 - -
Vian11g00526 421 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 31 398 IPR044300 GO:0010044|GO:0010447
Vian11g00526 421 SMART c2h2final6 244 266 IPR013087 -
Vian11g00526 421 SMART c2h2final6 339 361 IPR013087 -
Vian11g00526 421 SMART c2h2final6 301 334 IPR013087 -
Vian11g00526 421 FunFam Zinc finger protein 574 243 268 - -
Vian11g00526 421 SUPERFAMILY beta-beta-alpha zinc fingers 242 269 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00526 Vian-Chr11 5240901 5242166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00526 186 394 C2H2 Transcription Factor Family AT5G22890 62.162 7.00e-93 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian11g00526 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00526 - - gsj:114375424 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00526 11 5240901 5242166 Vian11g00526 11 5240901 5242166 ECH