Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00525 ATGTTGTCAGAAATATCAGACATGGAAGGCATGGCCATGGAGGAGCTTGTCTCATGCAACAACGATCCCACCAACATAGCCAAAGGGAAGCGAACAAAGCGACGCCTGAGGCCTTTGTCACCTTGTGTTGTCACCGCCGTTACTGCCACGGCCGCCGCCATGACATCAAGCTGTTCGAGTGCTTCTGGCGGCGGCGGTGGGTCGTTTTCGTCTATCACCTTGGAGGAGGAAGAGGAAGACATGGCAAACTGTTTGATTCTCCTGGCACAGGGAAGAGGAGGAAGCGATCCTCTTCATCACAAGGACTTATGTGATGATGTGAAGACGGAGAAGGGTGGCAGCAAAATTGAATTTTATGTTTACGAGTGCAAAACATGCAACAGAACATTCCCTTCTTTTCAAGCACTCGGTGGCCACAGAGCGAGTCACAAGAAGCCCAAGGTTGAGGAAAAGAAATCCCCACCACCGTCGTTGCCACCGCCACCGTCTTCGTCCTCGCAACTATTTAATTTTGAAGAAACGAAACCGAATCACATGAAGATTAGCCCTTCCGTTTCGCTTCAATTAGGGTGTGGAAACAATAGGGGTGGCTTAAATTTCCATGGGAACAAGTCCAAGATTCACGAGTGTTCCATTTGTGGGTCAGAATTCACATCAGGACAAGCATTGGGTGGCCACATGAGGAGGCACAGGTCATCTAACAACAATAATACTAATAATATCAATACTGTTGTTGTTCAGACGACAACAACAACTTCTGACGGTGCCGTTGAAGTTAAGCCTCGGAGTGTTCTACAATTGGATCTCAACCTGCCGGCGCCGGAGGACGATCTCCGGGACTCGAAGTTTCAGTTTTCGGGGAATCAGAATTCCATGATGCTGTCGGCTGCTCCGGCTTTGGTGGGATGCCATTATTAG 918 0.4902 MLSEISDMEGMAMEELVSCNNDPTNIAKGKRTKRRLRPLSPCVVTAVTATAAAMTSSCSSASGGGGGSFSSITLEEEEEDMANCLILLAQGRGGSDPLHHKDLCDDVKTEKGGSKIEFYVYECKTCNRTFPSFQALGGHRASHKKPKVEEKKSPPPSLPPPPSSSSQLFNFEETKPNHMKISPSVSLQLGCGNNRGGLNFHGNKSKIHECSICGSEFTSGQALGGHMRRHRSSNNNNTNNINTVVVQTTTTTSDGAVEVKPRSVLQLDLNLPAPEDDLRDSKFQFSGNQNSMMLSAAPALVGCHY 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00525 305 ProSitePatterns Zinc finger C2H2 type domain signature. 210 230 IPR013087 -
Vian11g00525 305 ProSitePatterns Zinc finger C2H2 type domain signature. 123 143 IPR013087 -
Vian11g00525 305 SUPERFAMILY beta-beta-alpha zinc fingers 120 230 IPR036236 -
Vian11g00525 305 Gene3D Classic Zinc Finger 118 230 - -
Vian11g00525 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 208 235 IPR013087 -
Vian11g00525 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 148 IPR013087 -
Vian11g00525 305 Pfam C2H2-type zinc finger 120 146 - -
Vian11g00525 305 Pfam C2H2-type zinc finger 208 232 - -
Vian11g00525 305 SMART c2h2final6 208 230 IPR013087 -
Vian11g00525 305 SMART c2h2final6 121 143 IPR013087 -
Vian11g00525 305 MobiDBLite consensus disorder prediction 137 169 - -
Vian11g00525 305 PANTHER ZINC FINGER PROTEIN ZAT5 73 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00525 Vian-Chr11 5233571 5234488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00525 21 305 C2H2 Transcription Factor Family AT2G28200 44.186 1.41e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian11g00525 zf-C2H2_6 2.2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00525 - - gmx:100788646 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00525 11 5233571 5234488 Vian11g00525 11 5233571 5234488 ECH
Vian11g00525 11 5233571 5234488 Vian2g02399 2 44458059 44458838 ECH
Vian2g02399 2 44458059 44458838 Vian11g00525 11 5233571 5234488 ECH
Vian3g02061 3 26537766 26538524 Vian11g00525 11 5233571 5234488 ECH