Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00521 ATGGATGCAATTCATCAAGACACACAGGCGTACATCAATGATTTTGAGCTGTACGACTTCGTTGACAATCCAAATTTTGATCAGTTCATCAATTTGATCCGAGGGGAGAACGAAGATGCTAACTGTGACTTCGGTTCTGACCTCATCACTGATGGTTTTGTTAACAATCAGCTCCTTCCATGCCCTGCAAACCCTTTTGATCAGAACTATAACAATGCTGTGAATGTCTATGATCAAAGCTCCACATTTAGCTCCTTTTCATGCTTTGATGGGGAGATGAAGGGAGAAGGAGAAGGGGAAAGAGAAGAAGAAGAAGAAGAACACGATGGAGAGCATTCTTCTGAAACAACAACAACCACCAAGAATGACGATTCCAAACCCAAACTGAAAAATGACAGGTCCAAGACTCTCATTTCTGAGAGGAGAAGGAGAGGCCGAATGAAGGAGAAGCTTTACGCATTGCGTTCTTTGGTTCCCAACATAACAAAGATGGACAAGGCTTCCATAATTGGAGACGCAGTAGCATACGTGCATGAGCTTCAAGCTCAAGCTAGGAAGCTGAAGGCTGAAGTTGCAGGACTTGAAGCATCTTTATTAGTGCGTGAAAACTATCAAGAATCAATTAACAATTCCAAAAATGTGCAAGCTGCTCGGAATAGTCATCCAATCTTCAAGAAGATCATGCAGGTGGAGATTGTGCAAGTGGAGGAAAGAGGGTATTATGCAAAAATAGTGTGCAATAAAGGAGAAGGAGTGGCTGCATCGTTGTTCAGAGCTCTTGAGTCTCTTGCAGGTTTTAGTGTTCAGAATTCAAACTTGGCTACAGTTTGTAACAGTTTTCAACTTACATTTACATTGAATATAAAAGGGTCTGAACCAGAAATTAACCTGCAAAATTTGAAGCTATGGGTGACTGGCGCTCTTCTGAACCAAGGTTTTGAATTTGTGGCATCCTTTTCTGGTTGA 966 0.4161 MDAIHQDTQAYINDFELYDFVDNPNFDQFINLIRGENEDANCDFGSDLITDGFVNNQLLPCPANPFDQNYNNAVNVYDQSSTFSSFSCFDGEMKGEGEGEREEEEEEHDGEHSSETTTTTKNDDSKPKLKNDRSKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVAYVHELQAQARKLKAEVAGLEASLLVRENYQESINNSKNVQAARNSHPIFKKIMQVEIVQVEERGYYAKIVCNKGEGVAASLFRALESLAGFSVQNSNLATVCNSFQLTFTLNIKGSEPEINLQNLKLWVTGALLNQGFEFVASFSG 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00521 321 MobiDBLite consensus disorder prediction 89 142 - -
Vian11g00521 321 Pfam Helix-loop-helix DNA-binding domain 138 181 IPR011598 GO:0046983
Vian11g00521 321 MobiDBLite consensus disorder prediction 111 142 - -
Vian11g00521 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983
Vian11g00521 321 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 13 311 - -
Vian11g00521 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 200 IPR036638 GO:0046983
Vian11g00521 321 Coils Coil 177 197 - -
Vian11g00521 321 Gene3D - 121 197 IPR036638 GO:0046983
Vian11g00521 321 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 127 197 - -
Vian11g00521 321 SMART finulus 137 186 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00521 Vian-Chr11 5197004 5198431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00521 12 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 53.035 2.37e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian11g00521 HLH 4.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00521 K26214 - gmx:100805451 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00521 11 5197004 5198431 Vian11g00521 11 5197004 5198431 ECH
Vian11g00521 11 5197004 5198431 Vian5g01111 5 33114139 33115428 PCT