Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00513 ATGGGAAGAGCTCCTTGCTGTGACAAGGCAAATGTGAAGAGAGGACCGTGGTCACCAGAAGAAGACTCAAAGCTGAAGGATTACATAGAGAAGCATGGAACTGGAGGGAATTGGATTGCTCTTCCTCAGAAAGCTGGTCTAAGGAGATGTGGAAAAAGTTGCAGATTGAGATGGCTTAACTATCTTAGGCCCAACATTAAGCACGGCGAATTCTCCGACGAGGAAGACAGAATAATCTGCAGCCTTTATGCTAATATTGGAAGCAGGTGGTCAATCATAGCTGCTCAGTTACCAGGGAGGACTGACAATGATATCAAGAACTATTGGAACACCAAGCTGAAGAGGAAACTCATGGGGTTGGTTCCTGCATCTCATCAAAGAATAGCACCCTATCAGCACTCCTCCTCCCAAAACCCTCCCTCACCATTTTCTTCTCAGACATCAATCTACAGAGACTACTGCAACAACTCTCCTTATTACATCCCAGCACCAACCTCATCTTTCCCATCCCTTCAACAAATTTCTGTTCCTTCAAGTAATTACACAAACACAACCTCCTCTCTTCCCTTTTATCAGAACCAAGAGCCTTTGGTCGGTGTTAGTCCCATGCAGTATTACCCCACCACAGACAGTTCCATGCTTGTGTTTGGAAGTGAAACAAGCTGCAGTTCCTCTGATGGGAGCTGCAGCCAGGTGAGCCTTTGCAGAGAGATAAAACAAGAAGAAATGGGATTTCAGAATTTGATGCTTGCAGATCAGCACATGAACAAGTTGATGCTGAGTCAAGGCAACGTGAATCACGATGGAGGTGAAGAGTACGTGAACCAATGGACAGAGAAGCCAAATGGGTGGGTCTTCCAAACGCAAGAAACAGCACTGGATTATGATCTTGAGGTTATTAAGCAACTGATTAGTAGTAACAGTAGCAGTAATAATAGTAATAATGGGTATTTTAGTATTGATGAAAACAAGACGGAGAAGGGAGTGTACTACAACTACTGA 1002 0.4411 MGRAPCCDKANVKRGPWSPEEDSKLKDYIEKHGTGGNWIALPQKAGLRRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICSLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKRKLMGLVPASHQRIAPYQHSSSQNPPSPFSSQTSIYRDYCNNSPYYIPAPTSSFPSLQQISVPSSNYTNTTSSLPFYQNQEPLVGVSPMQYYPTTDSSMLVFGSETSCSSSDGSCSQVSLCREIKQEEMGFQNLMLADQHMNKLMLSQGNVNHDGGEEYVNQWTEKPNGWVFQTQETALDYDLEVIKQLISSNSSSNNSNNGYFSIDENKTEKGVYYNY 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00513 333 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vian11g00513 333 FunFam Transcription factor RAX3 7 68 - -
Vian11g00513 333 FunFam Transcription factor MYB36 70 139 - -
Vian11g00513 333 Gene3D - 7 68 - -
Vian11g00513 333 CDD SANT 16 62 IPR001005 -
Vian11g00513 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vian11g00513 333 SMART sant 13 64 IPR001005 -
Vian11g00513 333 SMART sant 67 115 IPR001005 -
Vian11g00513 333 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vian11g00513 333 CDD SANT 70 113 IPR001005 -
Vian11g00513 333 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vian11g00513 333 PANTHER OS09G0431300 PROTEIN 1 286 - -
Vian11g00513 333 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vian11g00513 333 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vian11g00513 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vian11g00513 333 Gene3D - 69 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00513 Vian-Chr11 5103238 5104748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00513 1 119 MYB Transcription Factor Family AT5G57620 89.076 6.30e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian11g00513 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00513 K09422 - gmx:100796382 543.888