Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00512 ATGCAGAGATCCGGCTATGGCTCCGATGGAATATTCAGATCTCTCAGACCTTCAATCGTTTTACCCAAACAACCCAACCTCACACTCGTTTCCCACCTCTTCAACAGAGTCGCACCGTTTCCCTCCAAACAAGCTCTTATCGATGCCGATTCTTCTCAAACCCTTTCATTCGTACAGTTGAAAACGCTAACCGTTAAAGTTTCTCACGGCCTCCTCCGCCTCGGTGTCGCCAAAAACGACGTCGTCCTCTTCCTCGCCCCCAACGATATCCGTTACATCGTCTGCTTCCTCGCCGTCACCTCCCTCGGCGCCATCGTAACTACCGTCAACCCCGCATACACCGCTGCCGAGGTCGCCAAACAGGCCAAAGACTCCAATCCCAAACTTGTCATCACCGTCCCCGAACTCTGGGACAAGCTCCAACACCTCAACCTCCCCGCCGTGTTCCTCCACTCCCAGGCGCACTCCCATGCGACTAGCTTCGACGCGCTCGTCCAAGTCGCAGGGTCGCCTACCGAATTTCCGAAAGTTGACGTCAAGCAGAGTGATACGGCGGTGCTGCTGTACTCCTCCGGGACCACCGGTGTGAGCAAGGGCGTGGTTCTAACGCACGGGAACTTCGTGGCGGCATCGTTGATGATTGGGTTGGACGATGATTTGAACGGGGAGATGCATAGCGTGTTCCTCTGCGTTCTGCCGATGTTTCATGTGTTTGGTTTGACGGTGATTTCGTACGCGCAGCTTCAGAGGGGCAACGCTGTGGTGTCTCTGAAGAAGTTTGAATTTGAACTGGTTTTGAAGACGATTGAGAAGTTTAGAGTGACGCATTTGTGGGTTGTGCCTCCGATCATCCTTGCTTTGGCCAAACATGGTTTGGTCGATAAGTATGATCTTTCCTCGCTGAAGCATATTGGTTCTGGCGCTGCTCCTCTTGGGAAAGAGTTGATGGAGGAGTGTGCTAAGCGTTTCCCTCATGCTACTGTTGCTCAGGGATATGGTATGACTGAAACTTGTGGGATTGTTTCTGTGGAGAATACAAGGATGGGGATTCGGCATAGTGGCTCTACGGGAATGCTTGTTTCGGGTGTGGAAGCTCAAATAGTTAGCGTGGATACCCTGAAGCCTCTCCCTCCTGGACAGTTGGGGGAGATATGGGTACGGGGTCCTAATATGATGCAAGGTTATCACAACAATACCCAAGCCACAAGATTGACTAAAGATACAAAAGGGTGGGTACATACAGGAGATCTTGGATATTTTGACGAGGAAGGGCAACTTTTTGTTGTTGACCGTATCAAAGAACTGATCAAGTATAAAGGTTTCCAGGTTGCACCAGCAGAACTTGAAGGGCTTCTTGTTTCTCACCCTGAAATACTTGATGCTGTTGTCATCCCATATCCTGATGCTGAAGCTGGTGAGGTTCCAGTTGCCTATGTGGTTCGCTCACCACATAGTTCACTGACTGAGGAAGATGTTCAAAAGTTTATTGCTAATCAGGTAGCACCTTTCAAAAGATTACGAAGAGTGACATTCATCAATGCTGTTCCCAAGACAGCTTCGGGAAAAATTCTCCGAAGAGAGCTTATTGAGAAAGTAAGATCCAAAATATGA 1611 0.496 MQRSGYGSDGIFRSLRPSIVLPKQPNLTLVSHLFNRVAPFPSKQALIDADSSQTLSFVQLKTLTVKVSHGLLRLGVAKNDVVLFLAPNDIRYIVCFLAVTSLGAIVTTVNPAYTAAEVAKQAKDSNPKLVITVPELWDKLQHLNLPAVFLHSQAHSHATSFDALVQVAGSPTEFPKVDVKQSDTAVLLYSSGTTGVSKGVVLTHGNFVAASLMIGLDDDLNGEMHSVFLCVLPMFHVFGLTVISYAQLQRGNAVVSLKKFEFELVLKTIEKFRVTHLWVVPPIILALAKHGLVDKYDLSSLKHIGSGAAPLGKELMEECAKRFPHATVAQGYGMTETCGIVSVENTRMGIRHSGSTGMLVSGVEAQIVSVDTLKPLPPGQLGEIWVRGPNMMQGYHNNTQATRLTKDTKGWVHTGDLGYFDEEGQLFVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVIPYPDAEAGEVPVAYVVRSPHSSLTEEDVQKFIANQVAPFKRLRRVTFINAVPKTASGKILRRELIEKVRSKI 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00512 536 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 433 - -
Vian11g00512 536 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 531 - -
Vian11g00512 536 Gene3D - 434 535 IPR045851 -
Vian11g00512 536 Pfam AMP-binding enzyme C-terminal domain 447 522 IPR025110 -
Vian11g00512 536 FunFam 4-coumarate--CoA ligase 2 434 535 - -
Vian11g00512 536 Pfam AMP-binding enzyme 35 438 IPR000873 -
Vian11g00512 536 Gene3D - 9 433 IPR042099 -
Vian11g00512 536 CDD 4CL 21 528 - -
Vian11g00512 536 ProSitePatterns Putative AMP-binding domain signature. 187 198 IPR020845 -
Vian11g00512 536 SUPERFAMILY Acetyl-CoA synthetase-like 24 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00512 Vian-Chr11 5091090 5094547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00512 1 536 Monolignol Biosynthesis Gene Families AT4G05160 66.176 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00512 K01904 - gmx:100797843 937.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00512 11 5091090 5094547 Vian11g00512 11 5091090 5094547 ECH
Vian11g00512 11 5091090 5094547 Vian5g01134 5 33411499 33414498 PCT