Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00509 ATGGCCAAGCTCAGTGTAAGAAGCAGCAAGAGAAGTGTCAGTGACATTGTGAAGTTCAAATTCGTGGAGAAGCTCCAGAAGAGACTCTTACCAGGGAGAAGCAAAGAAGGGTCTGTTTCAAACTCAACGTATGTTCCAGAGGATGTGAAGGAAGGACACTTCGCTGTGATTGCTGAGGGTGGAGAAGAACACAAGAGGTTTGTGCTGCCACTCAGTTGTTTATCCAACCCTACGTTTTTGAAGCTGTTGGAGCAAGCAGAAGAAGAGTATGGCTTTGATCATGAAGGTGCTGTCACCATTCCTTGCAGGCCCAGTGACCTTGAGAAGATACTGGCTCATCAATGGCATCATCAAGGAACTCAAACTTCTGGTTCAAGAAAAACTCACAGAAAATCCATCGTTTTTTAA 408 0.4485 MAKLSVRSSKRSVSDIVKFKFVEKLQKRLLPGRSKEGSVSNSTYVPEDVKEGHFAVIAEGGEEHKRFVLPLSCLSNPTFLKLLEQAEEEYGFDHEGAVTIPCRPSDLEKILAHQWHHQGTQTSGSRKTHRKSIVF 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00509 135 MobiDBLite consensus disorder prediction 116 135 - -
Vian11g00509 135 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 33 110 IPR003676 GO:0009733
Vian11g00509 135 Pfam Auxin responsive protein 32 112 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00509 Vian-Chr11 5048440 5048847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00509 25 124 Calmodulin-binding Proteins AT3G43120 41.748 2.93e-17 71.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00509 11 5048440 5048847 Vian11g00509 11 5048440 5048847 ECH
Vian11g00509 11 5048440 5048847 Vian5g01138 5 33471082 33471486 PCT