Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00499 ATGTACAAGAAGAGGTTTTCTCATCGGATTGTTAAACTTGGTGAGTGGGAAATGAGCAGTTTAAGGCCTGAGTCTCATGTGGCACAGCAAATTCGGCGCGAAAAATTGAGAATCCAAAACAGTTCTCAACCTCTGCACGAATTTCCCAACAATCTTGAACCGTTATCGTTACAGCCGGGGTTTAATAACTTTGACCTTCTTCATGTTAGGAATGTTAGAAACGCTAACATGCTCGACGAACCAGTTGTTTATCCACCAGAAATGCCAAACTTCTCCACTTTGAACCCCTTGTCTACTCCAAAGAACGCTTTGGAGTATCATCAAGAAATAGGTGCAGCTGAAGCGAGTAACAGGCTGATGATGAATCAGTATGGTTCATTTTCCCATTCCATGCCCTCTATTCATTCTTCCCACAAGGAACAGTGTGAACTTCGTAATTTGGGAAATTGGAGGAACAGTGCTCCCCAACAAGGATCTGATTGGTTTATAAATTATCCAAGTAATGCCAATTCTTTTTTGTCTTCTGAGCTCAGCAACGTGTCTTCTTACAACGAACTAATGGATGCACAGTGTAGCAATGCATCTGATGAAATCAGTGGTAGAGAAATTCAAAAGCAATTAGGTGGACTGCATAATCCTCCTCCTCCTCCTCCACTGTATCAAAATGCTTTGCAAGATATTGTGAAGTCTGCCTCTATCAGCGCCCACACTAGGCAAGACATGACTTCCCTAATGCAGCAAAATGACCACAGCATTTGGGTGGGCAATAGTACTGAAGTTGAGCTTCAACAGCCGAGTTATGGAAATCAGCCAAATCCGTTGCGTTTTGGATGGACAAATCGAGCAATAGATAACATCCCGAGTGATTCACTTCCTCAGAGCTTATCCTTGTCACTTTCATCGAACGCACAACCCAAGCCTTCTGTTTCTCAACATGAGCAAGGGTCTACATCCGATGATCCTCGTTGTTTGAAGTATATGATGCCGTCTATTGTCTCTAGAGATTTTGCGAAATCACTTCAAGACACGGTGGGAATGCCTTCGAAGAGTACTATAAGTTACCGAAGTGTGGGTCCCCTTGGCCCTTTTACAGGGTATGCTACTATTCTTAAGAGTTCAAGGTTCTTAAAGTCTGTCCAACAGTTGTTAGATGAGATTTTCTGTGTATCTGGTGCAAAGTTTGCGAAATCATATGATGTTTCAGAACGTGTTTCTCCAGAAGTTAGTGCTTCTACTTCTGCGGATACTGTTACTGTCAATAACACCGGGTTTACTGCAAAAGGTAGCAACTCAGGTTCTTCATCAACTATGTTGTATAATGTGTCAAAGGAAAATTGTTCTGATTTGGGAGTTGGAAGTAGCTTTGGACTTTCTTCGCGGCCAGATTATCAACAGAAGAAAGCAAAACTGCTGTACATGCATGAGGAGGTTACGAGGCAATGCAAGCAGTACCATCTACAAATGCAGATGGTTATTTCTTCGTTCGAGTCAGTGGCGGGTCTTAGTTCTGCTACTCCTTACGTCTCCATGGCTCTCAAGTCAGTATCAAAACACTTCAGATGTTTAAAAAATTCTATCTCAGATCAGCTGAAGCTTGTAAGCGAAGCCTTGGGAGAGGATGTGTCAATACCCTCTTGCAGTACTGGCAGTAAAGCTGACACTACTATGGCAAGGATAAGATGCAGCATGGACCAAAGTTTTCTAAAGAACAAATCTGGCAGAGGGAGTACTACGGATCTTCTTGATCCACAACAGCATGTGTGGAGGCCCCAGAGAGGCTTGCCAGAGCGTGCAGTGGCAATTCTTAAAGCCTGGTTATTTGAGCATTTTCTTCATCCTTACCCTACAGACACTGATAAACACATGCTCGCTAGTCAAACAGGTCTATCACGGAATCAGGTATCAAATTGGTTCATAAATGCTCGAGTACGAGTATGGAAGCCAATGGTTGAGGAAATACACATGCTTGAAACAAAAGCAACAGGCACCAGAGAGAAGAGTGGTAAACATGAGGGAACATCTTCTGGCCCTGAAGGTGGTGATAGCAGCCAACCTAGAGTGGATAAGCCTTTGAGAAATATTGGTATGAATTCAATACCTGAAAATAGATTTGAGGGCATGGAAATGGAATCAAGCAATGCTGAAGAAAGAGGGTTAAGTGAAGAAGAATGGAGTCAAGAGAAAAGATCTAAATTGGAATGCCAAATGACTTCAAACAATATGGATGGTACATTGATGGGTTTTATGCCATACCGACGCGGTGGCCTTGAGGTTGGTGGACTTGATTCTGTGTCACTAACGTTGGGTCTTAGACATGGCGTTGAAGGAGTACAACATCAACAACAATTGCAAGAGGAGCAGCTTCGACATCATCACCTCGGAGGGCACATGATCCGTGACTATGTGGGCTGA 2412 0.4316 MYKKRFSHRIVKLGEWEMSSLRPESHVAQQIRREKLRIQNSSQPLHEFPNNLEPLSLQPGFNNFDLLHVRNVRNANMLDEPVVYPPEMPNFSTLNPLSTPKNALEYHQEIGAAEASNRLMMNQYGSFSHSMPSIHSSHKEQCELRNLGNWRNSAPQQGSDWFINYPSNANSFLSSELSNVSSYNELMDAQCSNASDEISGREIQKQLGGLHNPPPPPPLYQNALQDIVKSASISAHTRQDMTSLMQQNDHSIWVGNSTEVELQQPSYGNQPNPLRFGWTNRAIDNIPSDSLPQSLSLSLSSNAQPKPSVSQHEQGSTSDDPRCLKYMMPSIVSRDFAKSLQDTVGMPSKSTISYRSVGPLGPFTGYATILKSSRFLKSVQQLLDEIFCVSGAKFAKSYDVSERVSPEVSASTSADTVTVNNTGFTAKGSNSGSSSTMLYNVSKENCSDLGVGSSFGLSSRPDYQQKKAKLLYMHEEVTRQCKQYHLQMQMVISSFESVAGLSSATPYVSMALKSVSKHFRCLKNSISDQLKLVSEALGEDVSIPSCSTGSKADTTMARIRCSMDQSFLKNKSGRGSTTDLLDPQQHVWRPQRGLPERAVAILKAWLFEHFLHPYPTDTDKHMLASQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKATGTREKSGKHEGTSSGPEGGDSSQPRVDKPLRNIGMNSIPENRFEGMEMESSNAEERGLSEEEWSQEKRSKLECQMTSNNMDGTLMGFMPYRRGGLEVGGLDSVSLTLGLRHGVEGVQHQQQLQEEQLRHHHLGGHMIRDYVG 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00499 803 Pfam Associated with HOX 369 527 IPR006563 -
Vian11g00499 803 MobiDBLite consensus disorder prediction 657 701 - -
Vian11g00499 803 CDD homeodomain 588 649 IPR001356 GO:0003677
Vian11g00499 803 ProSiteProfiles 'Homeobox' domain profile. 585 648 IPR001356 GO:0003677
Vian11g00499 803 FunFam BEL1-like homeodomain protein 9 591 653 - -
Vian11g00499 803 SMART HOX_1 588 652 IPR001356 GO:0003677
Vian11g00499 803 MobiDBLite consensus disorder prediction 657 672 - -
Vian11g00499 803 SUPERFAMILY Homeodomain-like 590 654 IPR009057 -
Vian11g00499 803 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 248 673 - -
Vian11g00499 803 MobiDBLite consensus disorder prediction 294 317 - -
Vian11g00499 803 SMART prehox3 364 528 IPR006563 -
Vian11g00499 803 MobiDBLite consensus disorder prediction 294 322 - -
Vian11g00499 803 Pfam Homeobox KN domain 605 644 IPR008422 GO:0003677|GO:0006355
Vian11g00499 803 Gene3D - 591 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00499 Vian-Chr11 4906965 4912381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00499 292 658 Homeobox Transcription Factor Family AT5G02030 43.089 5.82e-70 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vian11g00499 POX 1.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00499 - - gmx:100790583 1164.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00499 11 4906965 4912381 Vian11g00499 11 4906965 4912381 ECH
Vian11g00499 11 4906965 4912381 Vian5g01152 5 33745557 33750771 PCT