Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00496 ATGACCATGGGCCTGTGGCTTTTGATGTGGGCAACGGCCATGGGCCTCTTGATCCAACTCTTCTCTGCCTGCCTCGGCGTTGCCACCGGGAAGCACCTCGCTGAACTCTGCAGAGACTGCTCAACCCTTAGAGAAAATCTGGAAGAAAGAGCAGCAGAGTTGGAGGAAAAAGTACGACTTATGATGAATGCAACAGACATGGAACCACTAAGCTTACTTGAACTGGTTGATGATATTGAACGCTTGGGACTGTTCTTCAGGTTCCAGGACTGGATAAACAAAGCCCTTCTCACACTTGTTTCAATTGAAAACTTCAAACACCGAACCACAAAAACTCTTCATGAAACCGCTCTTCTTTTTCGAATTCTCAGACGACATGGCTTTCATGTCTCCCAAGACATTTTTAAGAATTTCAAAGATGAAGAAGGAAAATTCAAGGCTGAAATTTGCAACGATGTAGAAGGAATGTTAAGTTTGTACGAAGCATCATACTTGACCTTGGAAGGAGAAAGTCTTTGGGAGGCAAATGCATTTTCAAGAACACATCTGATGAATTTAATGGAAGAAAGATCAATGGATGCGAAAATGGCAGAAAAAGTTAGGCATGTATTGGAGGGGCTTCCTTATCACAAAAGTTGTTGTAGACTGGTGGCACAACACTATATTAACACGTATGATAAGACAGAACCGCATAATCTCTTATTCTTAGAACTTGCAAAGGTGGAATTCAACATGGAGCAGTCATCATATCAAAACGAGTTAAAAGAACTATCAAGGTGGTGGTCGGACATTGGCCTCTCAAAGAAACTAAAGTTTGCTCGAGACAGATTAGTAGAAATATTTATTTGGACGGTAGCAACTTTTCCTGAACCTCAATATGCTATCTGTCGCAAAGTAATCAGTAAGATAGCAATATTAATCACATTCCTCGATGATATATATGACATCTACGGTACTTTAGAAGAATTGGAGCTCTTCACAAATGTCATCGAAAGATGGAACGTGAATTCCATAAACACTCTTCCAGACTACATGGTATTGTGTTTCCTAGCCATCTATAACACTGTTAATGGGTTGGCTTATGACATCTTTAAAGAACGAGGCACAAATTGTCTTCCTTACCTCACAAAATCTTTATCTGATTTGTGCAAAGCATACCTCCAAGAAGCAAAGTGGTTTCACAACAAAATCATTCCACCATTCGATAAGTTCCTAGAAAATGCAAGGATCTCGATCGCAGCAGGGTTTATTCTTACTCATGTTTACTTCTTGATCAGCCAAGACATCACAGAACAAGTGATTCACTCTCTAACTAATAATGACCACGACTTGTTGCGCTCTGTATACACCAATTTTAGGCTTAGCAATGATTTGGGAACATCAACGGACGAGATAGAGAGGGGTGAAACCTCCAACTCAATTGTCAGCTATATGCACGAAACTGGTCTTCCAGAAGAAGATGTCCGACAATACTTCAAAACTTTGATGGAGAAAGAATGGAAAAACTTGAATAAATACCTAATTATGGATTCTATATTCCCTAAATCTTTTGTTCAAGTTGTCATTAATCTCGTTCGGAGTGGTCATTTCATATATCAACATGGAGATGGATTTGGACGACAAAACAATATAACAAAGAACACAATTAAGTCAGTACTATTGTACCCGTTCCAACTAATGTGCCATGACGATGTTGAGAAAATAAAGTTTTAA 1713 0.3935 MTMGLWLLMWATAMGLLIQLFSACLGVATGKHLAELCRDCSTLRENLEERAAELEEKVRLMMNATDMEPLSLLELVDDIERLGLFFRFQDWINKALLTLVSIENFKHRTTKTLHETALLFRILRRHGFHVSQDIFKNFKDEEGKFKAEICNDVEGMLSLYEASYLTLEGESLWEANAFSRTHLMNLMEERSMDAKMAEKVRHVLEGLPYHKSCCRLVAQHYINTYDKTEPHNLLFLELAKVEFNMEQSSYQNELKELSRWWSDIGLSKKLKFARDRLVEIFIWTVATFPEPQYAICRKVISKIAILITFLDDIYDIYGTLEELELFTNVIERWNVNSINTLPDYMVLCFLAIYNTVNGLAYDIFKERGTNCLPYLTKSLSDLCKAYLQEAKWFHNKIIPPFDKFLENARISIAAGFILTHVYFLISQDITEQVIHSLTNNDHDLLRSVYTNFRLSNDLGTSTDEIERGETSNSIVSYMHETGLPEEDVRQYFKTLMEKEWKNLNKYLIMDSIFPKSFVQVVINLVRSGHFIYQHGDGFGRQNNITKNTIKSVLLYPFQLMCHDDVEKIKF 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00496 570 Pfam Natural resistance-associated macrophage protein 5 39 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vian11g00496 570 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 43 230 IPR008930 -
Vian11g00496 570 SUPERFAMILY Terpenoid synthases 231 557 IPR008949 -
Vian11g00496 570 Gene3D - 67 231 IPR036965 GO:0010333|GO:0016829
Vian11g00496 570 FunFam Isoprene synthase, chloroplastic 222 547 - -
Vian11g00496 570 PANTHER OS04G0344100 PROTEIN-RELATED 53 539 - -
Vian11g00496 570 Pfam Terpene synthase family, metal binding domain 236 501 IPR005630 GO:0000287|GO:0010333|GO:0016829
Vian11g00496 570 Pfam Terpene synthase, N-terminal domain 41 204 IPR001906 GO:0010333|GO:0016829
Vian11g00496 570 SFLD Isoprenoid Synthase Type I 231 558 - -
Vian11g00496 570 Coils Coil 37 64 - -
Vian11g00496 570 Gene3D Farnesyl Diphosphate Synthase 43 547 IPR008949 -
Vian11g00496 570 CDD Terpene_cyclase_plant_C1 57 556 IPR044814 GO:0010333|GO:0016102
Vian11g00496 570 SFLD Terpene Cyclase Like 1 C Terminal Domain 231 558 IPR034741 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00496 Vian-Chr11 4882995 4888663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00496 5 39 Inorganic Solute Cotransporters AT2G23150 88.571 8.51e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00496 K12742 - gmx:100786684 522.316