Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00490 ATGCATCACAGACAACTACCTCCAGAACTAAGAGAATCTGTGCGTAAATACGACCAATACAAATGGCTGGCCACACGAGGAGTAGATGAAGAATCTCTTCTCAAAGGACTCCCAGTGGATCTTCAGAGAGACATCAAACGCCACCTTTGTCTCGATCTAGTTCGAGGAGTGCCATTATTTGATCAAATGGATGAGAGAATGTTGGATGCAATCTGTGAAAGGCTGAAGCCTGCACTGTGCACAGAGGGAACGTTCCTTGTGCGAGAGGGTGATCCTGTCAATGAGATGCTCTTCATAATCAGGGGCCATCTTGATTCCTACACCACCAACGGGGGAAGGGCCGGGTTCTTCAACTCGTGCCGCATTGGGCCGGGCGATTTCTGCGGCGAGGAGCTTCTAACTTGGGCCTTGGACCCACGGCCCAGTGTGATCCTCCCTTCGTCCACTCGAACAGTGAAAGCCATATCGGAAGTGGAGGCCTTTGCACTGATAGCGGAAGACCTGAAATTCGTGGCGTCACAGTTCAGAAGACTGCACAGCAAACAACTGAGACACAAATTCAGGTTTTACTCACACCAGTGGAGAACCTGGGCTGCGTGTTTCGTTCAAGCCGCGTGGAGAAGGCATAAGAAGAGGAAGGAACTTGCTGAACTAAGGGCCAGAGCCATTAACAATGCAGAACCTGAGACACCAACGTATGCCAAAAGGGTCGCTAGGAGTACTAGGAAAGCTGTTCATGTCTCTTCTCCCACAAATTCTGGAGTTGTGTCCTCTTTGCCGAAGCCAGCAGAACCAGATTTCTCAGTGGATGAACGATATTAA 822 0.4988 MHHRQLPPELRESVRKYDQYKWLATRGVDEESLLKGLPVDLQRDIKRHLCLDLVRGVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRAGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFVQAAWRRHKKRKELAELRARAINNAEPETPTYAKRVARSTRKAVHVSSPTNSGVVSSLPKPAEPDFSVDERY 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00490 273 Pfam Cyclic nucleotide-binding domain 82 169 IPR000595 -
Vian11g00490 273 MobiDBLite consensus disorder prediction 244 258 - -
Vian11g00490 273 SMART cnmp_10 59 190 IPR000595 -
Vian11g00490 273 FunFam Cyclic nucleotide-gated ion channel 1 57 175 - -
Vian11g00490 273 SUPERFAMILY cAMP-binding domain-like 1 185 IPR018490 -
Vian11g00490 273 Gene3D Jelly Rolls 57 177 IPR014710 -
Vian11g00490 273 ProSiteProfiles cAMP/cGMP binding motif profile. 59 156 IPR000595 -
Vian11g00490 273 MobiDBLite consensus disorder prediction 237 273 - -
Vian11g00490 273 CDD CAP_ED 59 190 IPR000595 -
Vian11g00490 273 Gene3D Helix hairpin bin 1 50 - -
Vian11g00490 273 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00490 Vian-Chr11 4778987 4779950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00490 1 268 Ion Channels AT2G28260 80.597 2.29e-150 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00490 K05391 - gmx:100786868 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00490 11 4778987 4779950 Vian11g00490 11 4778987 4779950 ECH
Vian11g00490 11 4778987 4779950 Vian5g01161 5 34068500 34069195 PCT