Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00484 ATGAAGGACTCTTGGTTTTTCGACAATAACTTCAACGGTCTGTCAGATGATATTTTTGATGATGTCGTGGGCTTTTTTGATTTCCCACTGGAAGATGTAGAAGATGACTGGGATTCTCAATTTAAATGCCTTGAACACCAACATTCTGAGGTTTTTTCAGCATCATCAAATGGGCTGTGTGCCAAAACACAAACTGAAAATCCTCAATTTGGGACGGAGTTCTCTGTTTCTTGTAATGGGATTTCCCCAATCAAACAGCTGGCAAAGGCTCCTGGACCAACCATTCCCCTCAAGAATGTCACTTTCAATGGAAAAGATTTGCACCGATTCCGAACCTACAGCCCAGTTTCAGTTTTTGAAAGCAGCAGTTCTTCCTCTGTTGAGAATTCGAGCTTTGATCGACCTGTCATTCCAGTAAAGCGTGCTCGAAGTAAACGGCATCGTCGATTAAGTTTCAGTCCTCTATTTTCCATTCCTGTCGTCCAGGCTTTGCAAAAACAGCAAAGGACATCTGCCTCTGAATCAGATTTTGGAACAAATGTTGCTGGGAATATGTCAAACAAAGTAAAAAGCCACAAGAAAAAGGATTTGTCCCTGCCATCAGAAGATGTTGAGTTAATGAGATCCTCACATCTGGTGTCAGATCCACCAAGGAAATGCACGCATTGTGAGGTGACAAAGACCCCACAATGGAGAGAGGGACCTATGGGTCCCAAAACACTGTGCAATGCTTGTGGTGTTCGGTACAGGTCCGGCCGCCTCTTTCCCGAATACCGGCCGGCAGCTAGCCCAACTTTTGTTGCATCATTGCACTCAAACTGTCACAAGAAGGTCGTGGAGATGAGAAGCTTAGTCCAGGAGGATGTTAGGGGTTCTGTGTTTGCTTCATCAAATCTCCATGGAAATTCTGTAGGATAA 918 0.4434 MKDSWFFDNNFNGLSDDIFDDVVGFFDFPLEDVEDDWDSQFKCLEHQHSEVFSASSNGLCAKTQTENPQFGTEFSVSCNGISPIKQLAKAPGPTIPLKNVTFNGKDLHRFRTYSPVSVFESSSSSSVENSSFDRPVIPVKRARSKRHRRLSFSPLFSIPVVQALQKQQRTSASESDFGTNVAGNMSNKVKSHKKKDLSLPSEDVELMRSSHLVSDPPRKCTHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNCHKKVVEMRSLVQEDVRGSVFASSNLHGNSVG 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00484 305 PANTHER GATA TRANSCRIPTION FACTOR 34 284 - -
Vian11g00484 305 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 215 276 - -
Vian11g00484 305 FunFam GATA transcription factor 210 295 - -
Vian11g00484 305 ProSitePatterns GATA-type zinc finger domain. 220 245 IPR000679 GO:0006355|GO:0043565
Vian11g00484 305 ProSiteProfiles GATA-type zinc finger domain profile. 214 250 IPR000679 GO:0006355|GO:0043565
Vian11g00484 305 CDD ZnF_GATA 219 266 IPR000679 GO:0006355|GO:0043565
Vian11g00484 305 Gene3D - 213 282 IPR013088 GO:0006355|GO:0008270
Vian11g00484 305 Pfam GATA zinc finger 220 253 IPR000679 GO:0006355|GO:0043565
Vian11g00484 305 MobiDBLite consensus disorder prediction 171 187 - -
Vian11g00484 305 SMART GATA_3 214 264 IPR000679 GO:0006355|GO:0043565
Vian11g00484 305 MobiDBLite consensus disorder prediction 171 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00484 Vian-Chr11 4711520 4714951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00484 8 282 C2C2-Gata Transcription Factor Family AT1G08010 37.627 1.20e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vian11g00484 GATA 8.5e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00484 - - gmx:100778675 454.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00484 11 4711520 4714951 Vian11g00484 11 4711520 4714951 ECH