Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00476 ATGGCCAAAGACGTTGAGCAGGTCACGGAGCAACCCGAATACTCCGCCAAGGACTACCACGACCCGCCTCCCACGCCGTTGTTCGACCCCGATGAGCTCACCAAGTGGTCCTTGTACAGAGCCGCCATAGCCGAATTCATAGCCACCCTCCTCTTCCTTTACATCACTGTCTTGACCATTATCGGCTACAAGAGACAGACCGACCCCAATATCGCCGGTACCACCGAGTGCGACGGGGTAGGCATTTTGGGCATCGCTTGGGCCTTCGGTGGCATGATCTTCATCCTCGTTTACTGCACCGCCGGCATCTCTGGGGGCCACATCAACCCTGCCGTGACGCTGGGGTTGTTCCTGGGGCGCAAGGTGTCGTTGGTGAGGGCGTTGCTGTACATGGTGGCACAGTGCGCCGGCGCAATCTGCGGTGCTGGGTTGGCGAAGGGGTTCCAAAAATCTTACTACAACAGGTACGGTGGAGGGGCTAACTCTGTGAGCGCTGGCTACAACAAAGGCACTGCCGTGGGTGCCGAAATCATCGGTACCTTTGTTCTTGTCTACACCGTTTTCTCCGCCACCGATCCTAAGAGAAACGCCAGGGACTCTCATGTTCCTTGGATTTACTGGGTTGGACCGTTTGCTGGAGCTGTGGCGGCTGCATTCTACCACCAATACATTCTGAGAGCTGCAGCTATAAAGGCCCTTGGATCCTTCAGGAGCAACGCATAA 723 0.5643 MAKDVEQVTEQPEYSAKDYHDPPPTPLFDPDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQTDPNIAGTTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTLGLFLGRKVSLVRALLYMVAQCAGAICGAGLAKGFQKSYYNRYGGGANSVSAGYNKGTAVGAEIIGTFVLVYTVFSATDPKRNARDSHVPWIYWVGPFAGAVAAAFYHQYILRAAAIKALGSFRSNA 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00476 240 ProSitePatterns MIP family signature. 107 115 IPR022357 -
Vian11g00476 240 SUPERFAMILY Aquaporin-like 32 226 IPR023271 -
Vian11g00476 240 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian11g00476 240 PRINTS Major intrinsic protein family signature 204 224 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian11g00476 240 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian11g00476 240 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian11g00476 240 MobiDBLite consensus disorder prediction 1 17 - -
Vian11g00476 240 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 203 IPR034294 -
Vian11g00476 240 Gene3D Glycerol uptake facilitator protein. 202 240 IPR023271 -
Vian11g00476 240 Gene3D Glycerol uptake facilitator protein. 25 201 IPR023271 -
Vian11g00476 240 MobiDBLite consensus disorder prediction 1 25 - -
Vian11g00476 240 Pfam Major intrinsic protein 32 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00476 Vian-Chr11 4603365 4604505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00476 1 240 Major Intrinsic Protein MIP AT2G37170 64.931 5.93e-127 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00476 K09872 - gmx:732604 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00476 11 4603365 4604505 Vian11g00476 11 4603365 4604505 ECH
Vian2g02357 2 43942776 43944679 Vian11g00476 11 4603365 4604505 ECH
Vian11g00476 11 4603365 4604505 Vian5g01175 5 34300464 34301889 PCT