Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00472 ATGCGTGAATGGAAAGAAATTAGGTTAATAATCCCCAAAACAACCTCAAATGGCTACCCTCTTCACCGCCCTTCCTCCTCATCCCACGTCTCAACCTTCACTGCTACACGTAGTACATTGACTGATAGATATTCTGATGGCATGGATGATGGGTATAAAAGTGTAGAAATACTGTTCCGACTTGTTGCTTTGCTTTGTCACCACGAAATGAGTGCTCAACAAAAAGAAACGGAAAATCATGACACGCTTTCGTCCAATCCAACGGTGGGTGATACAATGGGGGTAACCGGTGAAACCTCGCATGGAAACAATCACTGGAAGCCAGAGAAAATTCAGTTGGAAATACCGACCACAACATCGGAAGACTGTTGTCGGGATTTTGTTGGAATAAGGATGCCACTCACGCCAAGTCCAACTCCTAGTCAGAAGAAAGTGAATTTTCTTGTGACTTCTCGCTCTGTGGATGCTCCCAGACCTTCTTCTTCTTCGGCTTCGAGAGGCAAATCATCCATGAGAAACATCTTGCCGAGGTTTGGCTTCAAGAATCGTCAATCGCTTGATGTCGAAAAGGCTGTTACCGCAGCTTCGGAAGCTTCTTTTTCTGGCCATCAAGAAAAGTCCTCCATCGCTAGATCAGTGTCTCTCACCAAGATATTCACTCCTAAGATTAATAGAACGTCTTCGTTACCGATAGAAGAAATTGGACGTGCAGACGTAGAATCTGCTCTGGCTGGAACTCTTGCTGCTTCTCCATACGGAAGAGAGACGCAGGGGATGATAGCTCGTTCTCGTTCAGTGCCTGTCAATGGCAAAGAAAAAGGCATAAGGAGAATGGATTCAGTTTTCCGCATCATTCCTTCCACTCCTCGCGTACATGAAGTCAATCAATCAACAAAGGATTCTGACAATGGTGGTGGTGAAGATATCGGTCAAGAGGAAGCGGTGTGCAGAATTTGTCTGGTTGATCTATGTGAAGGAGGTGAGACATTAAAGATGGAATGCAGCTGCAAAGGTGAACTGGCTCTGGCTCACCAAGAATGTGCTGTTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAAGTTCGGAACCTCCCTGTCACTCTCTTACGGATCCGAAGTGTTCAAACCCAGAATACTGGAGTAAGGGTTTGGCAGGAACTCCCAGTGCTCGTTATTGTCAGCATGCTTGCCTACTTTTGTTTCCTTGAGCAGCTGTTGGTTGGAAAAATGGGAACCAGGGCAATTTTCGTCTCTCTTCCATTTTCATGTGTACTAGGCCTACTCTCCTCCGTAACATCAACGACCATGGTGAAGAGCAAGTTCATCTGGTTATATGCATCTGTCCAATTTCTTTCGGTGGTCCTATTCGCTCATATATTTTACCCCTTGGTTGGTAAGCATGCGGTTTTGTCGATCCTTCTTGCTACATTTGCCGGGTTTGGTGTTGTGATGAGTGGAAGTTCAATTGTTTTGGAGATTAGTAGATGGAGAAGAAGATGGCAAACTTTATCACAGCAGCAGCGTGGTTCTTCAGGATGA 1557 0.4528 MREWKEIRLIIPKTTSNGYPLHRPSSSSHVSTFTATRSTLTDRYSDGMDDGYKSVEILFRLVALLCHHEMSAQQKETENHDTLSSNPTVGDTMGVTGETSHGNNHWKPEKIQLEIPTTTSEDCCRDFVGIRMPLTPSPTPSQKKVNFLVTSRSVDAPRPSSSSASRGKSSMRNILPRFGFKNRQSLDVEKAVTAASEASFSGHQEKSSIARSVSLTKIFTPKINRTSSLPIEEIGRADVESALAGTLAASPYGRETQGMIARSRSVPVNGKEKGIRRMDSVFRIIPSTPRVHEVNQSTKDSDNGGGEDIGQEEAVCRICLVDLCEGGETLKMECSCKGELALAHQECAVKWFSIKGNKTCDVCKEEVRNLPVTLLRIRSVQTQNTGVRVWQELPVLVIVSMLAYFCFLEQLLVGKMGTRAIFVSLPFSCVLGLLSSVTSTTMVKSKFIWLYASVQFLSVVLFAHIFYPLVGKHAVLSILLATFAGFGVVMSGSSIVLEISRWRRRWQTLSQQQRGSSG 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00472 518 PANTHER OS02G0165000 PROTEIN 76 516 - -
Vian11g00472 518 Pfam RING-variant domain 316 363 IPR011016 GO:0008270
Vian11g00472 518 CDD RING_CH-C4HC3_MARCH 316 364 - -
Vian11g00472 518 ProSiteProfiles Zinc finger RING-CH-type profile. 308 370 IPR011016 GO:0008270
Vian11g00472 518 SUPERFAMILY RING/U-box 312 367 - -
Vian11g00472 518 SMART ringv_2 315 364 IPR011016 GO:0008270
Vian11g00472 518 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 371 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00472 Vian-Chr11 4558177 4561731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00472 313 370 C3H Transcription Factor Family AT2G37950 47.458 5.53e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00472 - - gmx:100782610 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00472 11 4558177 4561731 Vian11g00472 11 4558177 4561731 ECH
Vian11g00472 11 4558177 4561731 Vian5g01182 5 34328521 34333537 PCT