Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00465 ATGATGTCTGGTGAAGCAATAACTGTCCCTTCCAACCTCAGAGATTCCTCGGTTCAAGTTCACGACCCAATCTCAAACCCTAATCCTAACCCTAATCCAAACTCTTCGGTTAAGAGAAAAAGAAGCCTACCCGGAACACCAGATCCGAATGCCGAAGTGATTGCTCTGTCGCCAAAGTCGCTGATGGCCACGAACCGGTTCATATGCGAAGTGTGCAACAAGGGTTTTCAGAGAGACCAGAACCTGCAGCTGCATCGGCGAGGGCACAATCTGCCGTGGAAGCTGCGGCAAAGATCAAAGGAAGAGGTGAGGAAGAAGGTGTACGTGTGTCCCGAGAAGAGTTGCGTGCACCATGACCCTTGCAGAGCCTTGGGAGACCTCACTGGGATAAAGAAACACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGAAAAGTGCTCCAAGAAATACGCTGTTCAATCTGACTGGAAAGCCCATAACAAGATTTGTGGGACTAGACAGTACAAATGTGACTGTGGCACAATATTCTCCAGGAAGGACAGCTTTGTAACGCATAGAGCCTTTTGTGACGCTATGGTGGAACAAAGTGGGAGACTTCCGGCAATTTTATCAAACCTCGGAAACGATATTTTGATGAACGCGCAAGGCCCGAGATTAATGCCTCAGGGACTACAACTACACGGGTTTCATTCAGAGTTTGGTGGGCCAGGTTCAGAATCATACATGGGAAATTTTGCTGATGCTGAGCATGTTGAACATAAGCTAAGGTTGCCGATATGGCTAGACCAGACAAATCTTCAACTCAACCATCCTCTTGGCGTTGTTCCAGGCAATTCAAGTGTATTCTCAACCGGAACAACTTTGCCGGAAACAAACAACATGTTCGGGATATCGTCGTCACAGGCACAGTGGACAAATTACCGATACCCCGAAGCATCTTTTAGAAGTGCCAGTGTTTCTGTGCCTCATGGACTGAAGCTAGAGCAAGAAGAAAACAAAGGGGAGTTGTCGCATAGCGTGAGCTCTTTGTACCCAAGTCACATGGAATCTATCAGGATGGGTGGTAATTCACCTTTCGACAACTCTAACTTTGGCCTGTTAGACCCGAACATGTCAAGCACGTCAACCAACAATGTGGTCGAAATTCAGAAGATATTCAAGCAAGGAAACGAGGCTGAAAACTTCAGTCTCATGGTGAGTTCCCAGGCAAGAAGCAACATGGAAAGTGGGTTCTCCTTGAGTTGCAGGAAGAGTTTGGAGCATATGGTGATGCCTGGCATCGAAGAGTGGGAAAGTGGAGAAGCAGAAATAATGGAGAAGCAAGTACATTCAAGTTCAAACACTGAAACGAAAGATTTCATGGGTGTGGGAGATGGGTCAGTGATGAACCTGCAAAGGCAGTTCCTTGGACACTACTGA 1425 0.4716 MMSGEAITVPSNLRDSSVQVHDPISNPNPNPNPNSSVKRKRSLPGTPDPNAEVIALSPKSLMATNRFICEVCNKGFQRDQNLQLHRRGHNLPWKLRQRSKEEVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHNKICGTRQYKCDCGTIFSRKDSFVTHRAFCDAMVEQSGRLPAILSNLGNDILMNAQGPRLMPQGLQLHGFHSEFGGPGSESYMGNFADAEHVEHKLRLPIWLDQTNLQLNHPLGVVPGNSSVFSTGTTLPETNNMFGISSSQAQWTNYRYPEASFRSASVSVPHGLKLEQEENKGELSHSVSSLYPSHMESIRMGGNSPFDNSNFGLLDPNMSSTSTNNVVEIQKIFKQGNEAENFSLMVSSQARSNMESGFSLSCRKSLEHMVMPGIEEWESGEAEIMEKQVHSSSNTETKDFMGVGDGSVMNLQRQFLGHY 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00465 474 Pfam Zinc-finger double-stranded RNA-binding 67 89 IPR022755 -
Vian11g00465 474 Gene3D Classic Zinc Finger 46 118 - -
Vian11g00465 474 SMART c2h2final6 143 163 IPR013087 -
Vian11g00465 474 SMART c2h2final6 108 138 IPR013087 -
Vian11g00465 474 SMART c2h2final6 67 89 IPR013087 -
Vian11g00465 474 MobiDBLite consensus disorder prediction 1 49 - -
Vian11g00465 474 FunFam protein indeterminate-domain 12-like 46 114 - -
Vian11g00465 474 FunFam protein indeterminate-domain 5, chloroplastic-like 121 200 - -
Vian11g00465 474 SUPERFAMILY beta-beta-alpha zinc fingers 66 163 IPR036236 -
Vian11g00465 474 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 462 IPR031140 -
Vian11g00465 474 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Vian11g00465 474 MobiDBLite consensus disorder prediction 1 41 - -
Vian11g00465 474 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Vian11g00465 474 Gene3D Classic Zinc Finger 121 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00465 Vian-Chr11 4454032 4455896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00465 25 200 IDZ Gene Family AT3G50700 80.682 2.78e-110 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian11g00465 zf-C2H2_jaz 8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00465 K25870 - gmx:100811687 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00465 11 4454032 4455896 Vian11g00465 11 4454032 4455896 ECH
Vian11g00465 11 4454032 4455896 Vian5g01206 5 34535611 34537677 PCT