Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00463 ATGTCTGTCATCGACATTCTCTTCCGCGTCGATACCATTTGTCACAAATATGACAAATACGACATCGACAAGCAGCGCGAGCAAAACGCCTATGGCGACGACGCCTTTGCTCGCCTCTATGCAGCTGTCGAATCCAGCATTCAGACCGCTCTCAACGTTCCCTTCTCTTCCCTTCCCTTTTCATATCTTTCCGCGTTGCTTTTCTTCGAAATTCACTGCATCTCCCTCTTTGCTTCGATGCAGAAATCGGAGGCTGCTTCCACGGAGACCAACAGGGCAGTTGCTGCGGCTTTGAATGCGGAGGTTCGTCGGACAAAGGGTAGACTCATGGACGAGATTCCTAGACTGCGCAAATTACTGCATAAGAAGGTTAAAGGTCTCACAAAAGAGGATATGGCCATTCGTCAGGATCTTGTTCTGGCATTGCCCGAGAGAATCCAAGCAATACCTGATGGTATTTCTGGTGCTTCTATTCAAACTGCAGGATGGACTGCTGACTCATCTCAGCCATATATCAAGTTTGACTCAGAGGGACAACATGATACTGAATATTTCCAACAAAGTGAAGAATCCAGTCAGTTCCGACAAGAGTATGAGATGCGCAGGAAGAAACAGGATGAAGGACTTGATATCATATCGGAGGGATTGGATACCTTGAAGGAACTGGCCCAAGATATGAATGAGGAATTGGATCGGCAAGTTCCACTAATGGACGAAATTGACAAAAAGGTGGATAAGACAACAGCTGAACTGAGAAACACTAACGTGAAGCTGAAGAAAACTCTCAACGAGGTAACTGACATGATTAATTGCACTCTCCTTTCTGTGAAAACTTTCAAATTGCAAGTTTCAATTGATTTGCAATCTTTTGTTTCCTCTCCAGATAAGGTCTAG 894 0.4497 MSVIDILFRVDTICHKYDKYDIDKQREQNAYGDDAFARLYAAVESSIQTALNVPFSSLPFSYLSALLFFEIHCISLFASMQKSEAASTETNRAVAAALNAEVRRTKGRLMDEIPRLRKLLHKKVKGLTKEDMAIRQDLVLALPERIQAIPDGISGASIQTAGWTADSSQPYIKFDSEGQHDTEYFQQSEESSQFRQEYEMRRKKQDEGLDIISEGLDTLKELAQDMNEELDRQVPLMDEIDKKVDKTTAELRNTNVKLKKTLNEVTDMINCTLLSVKTFKLQVSIDLQSFVSSPDKV 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00463 297 FunFam Syntaxin 6 206 268 - -
Vian11g00463 297 Coils Coil 237 264 - -
Vian11g00463 297 CDD SNARE_Qc 202 260 - -
Vian11g00463 297 ProSitePatterns Syntaxin / epimorphin family signature. 205 244 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vian11g00463 297 SUPERFAMILY SNARE fusion complex 192 260 - -
Vian11g00463 297 PANTHER SYNTAXIN 89 263 IPR045242 -
Vian11g00463 297 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 199 261 IPR000727 -
Vian11g00463 297 Gene3D - 198 260 - -
Vian11g00463 297 Coils Coil 209 229 - -
Vian11g00463 297 SMART tSNARE_6 194 261 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00463 Vian-Chr11 4429613 4431745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00463 1 283 SNARE and Associated Proteins AT3G09740 54.608 7.22e-109 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00463 K08506 - gmx:100777251 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00463 11 4429613 4431745 Vian11g00463 11 4429613 4431745 ECH