Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00458 ATGGAAATTGATCTGAACTATGCAGTGACTGAGCCTGAGAAGACCGCGTCTTGCAATGGGGACTGTGACAAAGGTGCTGCTTGCGTTTGCTCTCTGTCCTCTCCTACTTGTTCATCTTCTGGTTCCTCCTCCGCACGTGTGTCCTCCTCTTATCTTGAGCTCTGGCACGCTTGTGCTGGCCCCCTCACTTCCCTCCCAAAGAAAGGGAATGTGGTCGTGTATTTTCCACAAGGGCACTTAGAACAAGCTTCATCTTTCTCTCCCTTTTCACCAATGGACATGCCAACCTATGATCTTCAGCCACAGATCTTCTGTAGAGTTGTCAATATTCAGTTACTTGCCAATAAGGAGAATGATGAGGTTTATACACAGGTTACTTTGCTTCCCCAGGCTGAGTGGTGGATTGAAATCTTGGGTTGTGCTCAGTTGGCAGGGATGTATATGGAGGGAAAAGAGATTGAGGAATTGGGAGCAGATGAAGAAGGAAATGAAACAACACCTACAAAATCAACTCCTCACATGTTCTGCAAAACACTCACAGCCTCAGACACCAGCACTCATGGGGGTTTTTCTGTCCCTCGCAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAAAGACCCTCTCAGGAGCTTGTTGCCAAGGACCTGCATAATGTAGAGTGGAAATTTCGACATATTTACAGAGGTCAGCCAAGGAGGCATCTGCTCACTACTGGCTGGAGTATCTTTGTTAGCCAAAAGAATCTTGTTTCTGGAGATGCAGTTCTCTTTCTGAGGGGTGAAAATGGAGAATTGAGATTGGGAATCCGAAGAGCTGCTCGACCAAGAAATGGTCTTCCTGAATCAATTGTTGGTAGCCAGAATTATTATCCCAATTTCCTTTCTTCTGTGGCCAATGCTATATCCTCCAAAAGCATGTTTCATGTTTTCTACAGTCCAAGGTGTAATCCAAGAGAGGATTGCACTTTGGAAACTGCTGACCCTCCTGTGGAATCTGACAGACACAGACATGCTTTTACTTCTCCATCTTGTCAACTAGCAAGTCATGCGGATTTTGTTGTGCCCTACCACAAATATGTCAAAAGCATAAAGAATCCAGTGACCATTGGGACAAGATTCAAAGTGAGATTTGAAATGGATGAGTCTCCCGAGAGAAGGTGTACTAGTGGTATAGTGACTGGAATGAGTGATTTGGATCCCTATAAATGGCCTAAGTCAAGATGGAGGTGCTTGATGGTCAGATGGGATGAAGATATTGAGATTAATCATCAAGATAGAGTATCGCCTTGGGAGATCGATCCTTCGGCATCTCTCCCTCCGTTGAGCATTCAATCCTCCAGAAGGCTGAAGAAACTGAGGCCAGGTCTGCAGGGTGCTTCACCCAGTCACCTCATCACAGGTGTGGCAGCAGGAGGCAGTGGGTTTATGGACTCTGAGGAGTCTGTAAGATCATCCAAGGTCTTGCAAGGTCAAGAAAAGTCAGGTTTTATGTCACTGTATTATGGATGTGACACAGTAACTAAGCAGCCAGAATTTGAGATCAGATCTCCAAGTCATCCAAATTTTGCATCATCAACTGGAGTGAGAAAGATTGCTGCTGGTGAGTTTATGAGGGTCCACCCTCCTAGTTATGCAGGCTTCACGGAACCTAACAGGTTTCCAAGGGTCTTGCAAAGTCAAGAAATATGTCAGTTGAGATCTCTGACAGGAAAGGTTGATTTGAACTTTGGTGCCTGGGGCAAACCCAGTGTCAGTTTCACAAATTACAACCTGCAACAGGCAACCAAACCCAACTTCCACTCTTTAGGACCAGAAGTTATTCAAACTGCATATTTTCCTTATGGTGATATTCACAAAGCTGGCCAAGGTAGCGGCACCAGCATGTTGTGCTCTAAACCTACCAATTTCCAGCGAGAGAATGTTCCATTTAACTCTCCTTCCTCTCAGTCAGGGATCATGAGAAATGAAGTTGGACGAGCAGAAGTCACAATCCAAAATGAGCAGAAGCTGCAGGACAATATTTCTGGTGCTGCTTCTTTAGGTACAAACGTGAGGATTCCAAATGATGATAATTTCAATGGGAAGGTAAATGCTTGTAAACTATTTGGATTTCCCTTGTCCGGGGAAGCCACCACCCAAAATTTACAGAACTCAGCTAAAAGAAGTTGCACAAAGGTTCACAAGCAAGGTAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGATTGAACAGCTACAGTGACCTGCTGATTGATCTAGAGAGACTATTTAGCATGGAAGGCCTTCTAAGAGATCCTAACAAGGGATGGAGAATCCTATACACTGACAGTGAAAATGACATCATGGTGGTGGGAGATGACCCGTGGCATGAGTTCTGCGAGGTGGTCTCGAAGATTCATATCCATACACAAGAAGAAGTTGAGAAGATGACAATTGGGATGATGAATGATGATACCCAGAGCTGTTTGGAACAGGCACCAGTGATGATAGAGGCTTCAAAGTCTTCTTCTGTGGGTCAGCCAGATTCTTCTCCGACAGTGGTTAGAATCTAG 2562 0.4489 MEIDLNYAVTEPEKTASCNGDCDKGAACVCSLSSPTCSSSGSSSARVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQASSFSPFSPMDMPTYDLQPQIFCRVVNIQLLANKENDEVYTQVTLLPQAEWWIEILGCAQLAGMYMEGKEIEELGADEEGNETTPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHNVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAARPRNGLPESIVGSQNYYPNFLSSVANAISSKSMFHVFYSPRCNPREDCTLETADPPVESDRHRHAFTSPSCQLASHADFVVPYHKYVKSIKNPVTIGTRFKVRFEMDESPERRCTSGIVTGMSDLDPYKWPKSRWRCLMVRWDEDIEINHQDRVSPWEIDPSASLPPLSIQSSRRLKKLRPGLQGASPSHLITGVAAGGSGFMDSEESVRSSKVLQGQEKSGFMSLYYGCDTVTKQPEFEIRSPSHPNFASSTGVRKIAAGEFMRVHPPSYAGFTEPNRFPRVLQSQEICQLRSLTGKVDLNFGAWGKPSVSFTNYNLQQATKPNFHSLGPEVIQTAYFPYGDIHKAGQGSGTSMLCSKPTNFQRENVPFNSPSSQSGIMRNEVGRAEVTIQNEQKLQDNISGAASLGTNVRIPNDDNFNGKVNACKLFGFPLSGEATTQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLNSYSDLLIDLERLFSMEGLLRDPNKGWRILYTDSENDIMVVGDDPWHEFCEVVSKIHIHTQEEVEKMTIGMMNDDTQSCLEQAPVMIEASKSSSVGQPDSSPTVVRI 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00458 853 ProSiteProfiles PB1 domain profile. 725 807 IPR000270 GO:0005515
Vian11g00458 853 SMART B3_2 175 277 IPR003340 GO:0003677
Vian11g00458 853 Gene3D - 721 814 - -
Vian11g00458 853 FunFam Auxin response factor 173 277 - -
Vian11g00458 853 Gene3D - 371 443 - -
Vian11g00458 853 Pfam Auxin response factor 351 415 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vian11g00458 853 SUPERFAMILY DNA-binding pseudobarrel domain 166 287 IPR015300 -
Vian11g00458 853 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 50 814 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vian11g00458 853 CDD B3_DNA 173 275 IPR003340 GO:0003677
Vian11g00458 853 Gene3D - 173 277 IPR015300 -
Vian11g00458 853 ProSiteProfiles B3 DNA-binding domain profile. 175 277 IPR003340 GO:0003677
Vian11g00458 853 Pfam AUX/IAA family 717 809 IPR033389 -
Vian11g00458 853 FunFam Auxin response factor 720 814 - -
Vian11g00458 853 SUPERFAMILY CAD & PB1 domains 728 804 - -
Vian11g00458 853 Coils Coil 853 853 - -
Vian11g00458 853 Pfam B3 DNA binding domain 175 276 IPR003340 GO:0003677
Vian11g00458 853 FunFam Auxin response factor 370 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00458 Vian-Chr11 4381636 4387212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00458 47 853 B3 DNA Binding Superfamily AT5G60450 57.055 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vian11g00458 AUX_IAA 8.8e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00458 - - gmx:100812909 1410.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00458 11 4381636 4387212 Vian11g00458 11 4381636 4387212 ECH
Vian11g00458 11 4381636 4387212 Vian5g01211 5 34611641 34616634 PCT