Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00457 ATGGATTTGGTAGCTAGTTGCAAGGAAAAATTGCAATATTTTCGTTTGAAAGAGCTCAAAGATGTGCTCACTCAATTGGGACTCTCAAAACAGGGAAAGAAGCAGGATCTTGTTGATAGGATATTGTCTATTCTTTCAGAGGACCAAGTTTCTAAATTGTGGATCAAGAAGAATGCAGTTGGAAAACAACGAGTGGCCAAATTAGTGGAGGACACATATAGAAAATTGCAGGTATCTGGGGCCATTGACCTGTCATCGAAGGGACAGGGCTCTGATAGCAGTAATGTGAAAATTAAAAATGAAATGGAGGATTCCTTTCTATCAGATACTAAGATTCGCTGTCTCTGTGGAAATGTATTGGATACGGACCCATTGGTCAAGTGTGCAGATACAAGATGTCATGTGTCGCAGCACATCAACTGTGTTGTTATTCCAGAGAAACCTACGGATGGAACCCCACATGTTCCTGATAAATTCTACTGTGAAATATGTCGAGTTGATCGGGCAGACCCGTTCTGTGTTTCAGTGACACACCTTTTGTTTCCGGTGAAGTTGACAACAACCAATATTCCCACTGATGGAACCAGCCCAGTACAGAGTGTGGAAAGAACGTTTCAACTCACTAAAGCAAACAAGGAGTTGGTATCGAAACCAGAATATGATGTTCAGGCTTGGTGTATGCTTTTGAATGACAAGGTTTCATTCAGGATGCAATGGCCACAATATACAGATTTAAAAGTCAACGGTCTTCCTGTTCGTGCAATTAACAGACCCGGTTCACAGGTGCTTGGGCCTAACGGTCGTGACTCTGGTTCAGTTATCACACCATATTCAAAGGATGGAATTAATAGGATTTCCTTGACAGTGGTGGATGCTCGCATATTCTGTTTAGGGGTTCGAATTATTAAAAGGCTCACCGTGCCAGAGATTCTAAGCATGATTCCAGAGGAGCCTAATGGTGAGAGTTTTGAAGATGCTCTTGCACGTGTTTGTTGTTGTGTTGGGGGTGGTAATGCAAATGATAATGCTGATAGTGATAGTGATTTGGAAGTGGTTTCAGATACTTTTAGCATCAATCTTCGTTGCCCAATGAGTGGTTCAAGAATGAAGATTGCAGGAAGATTCAAACCTTGTGTTCACATGGGCTGTTTCGATCTTGAAGTTTTTGTTGAATTGAATGAACGATCAAGGAAGTGGCAGTGCCCCATATGCCTTAAAAATTATGCTTTGGAGAATATCATCATTGACCCTTACTTCAATCGCATCACTACTCTGATGAAAAATTGTGGAGAAGAGATTACAGAGGTCGAGGTGAAGCCTGATGGTTTTTGGCGTGTCAAGGTTAAGAATGAAAGTGAACGTCGGGAGTTGGGAACTCTTGCTCATTGGCACCGTCCTGATGGATCCCTCTTTGTCTCTACTGATGAAATCAATAAAATGGAAAATTTAAAGCTCAAACAGGAAGGTGTTTCAGATGGTCATATTGGTTTAAAACTTAGGAAGAATAGTAACGGTGTTTGGGAAGTCAGCAAACCTGAGAATACAAACACCTCTTCTGGTAATAATAGATTGAATGAGGATCTTGAAAATATTGAACATGTTATTATTCCAATGAGCAGCAGTGACACTGGAAGTGGCCGGGATGAAGATGATCCAAGTGTAAATCAGGGTGGTGGTGGGCATATTGATTATTCTACTACCAATGGTATTGAGATTGATTCTGTGTTTAACAGTAATATTGATTCAGCATATGGATATTCTGTTCATAATGCTTCTGCTCCAATTGGTGATGCAGAAGTTATTGTTATTAGTGATTCAGAAGAAGACAACGATGTATTGATGTCTCCAACTCCTATAACCGGGTACACGAATAATCAAACTAGTGCTGCAGTTGATGTTTACTCGGTGCTAGAGCCTGGAATTCTTGATTCATATACGGAAGATCCCAATCCTGGTGGAAATGCAAGTTTAGGAGTTTTTAATAGTCATCCCAGTGAAGATGATTTTGGGATGTCCTCCCTCTGGCCATTGCAATCTGGAACTCCAGCAGTCCCAGGATTCCAATTATTTAGTTCTGAAGTGGAGGACGTGTCAGATACATTGGTTGGTTTGCAGAGTGGTAACATCAATTGCTCATCGTCACTGAATGGTTATATGTTGGCCCCGGATACTGCTTTGGGATCTAGCACTCTTATGCCAGATTCCTCGGTGGCTCGACCTGATGATGATTTAAATGGTGGCTTGGTTGACAATCCACTGGCATTTCCCAGAGAAGATCCCTCCCTTCAGATTTTTCTCCCTACAAAACCAGCAGAATCATCCATTCAGCATGAATTGAGTGATCATGCGGACATATCAAATGGTGTCTTCACGGAGGATTGGATCACTCTTAGTCTTGGAGGTGGTGCTAGTGGCCGTAATGGTGATGCTTCCACTGCAACTGGATTGAATTCCAGACCGCAAATAGCATCTGGAGAAGGTGCCTCAAATTCCTTGACAGATACCGCTCCTTTACACCTTGGTATCAATGATGTTAGATCTGACAAGGCGAATGGGAAAAGATCTGATTCAGACAGCCCTTTCTCTTTTCCTCGCCAAAAACGTTCAAAACTGAAGAAAGTTGAGCAGCATTTTTGGTCCTCAGGAAATGGAAGATGA 2658 0.4187 MDLVASCKEKLQYFRLKELKDVLTQLGLSKQGKKQDLVDRILSILSEDQVSKLWIKKNAVGKQRVAKLVEDTYRKLQVSGAIDLSSKGQGSDSSNVKIKNEMEDSFLSDTKIRCLCGNVLDTDPLVKCADTRCHVSQHINCVVIPEKPTDGTPHVPDKFYCEICRVDRADPFCVSVTHLLFPVKLTTTNIPTDGTSPVQSVERTFQLTKANKELVSKPEYDVQAWCMLLNDKVSFRMQWPQYTDLKVNGLPVRAINRPGSQVLGPNGRDSGSVITPYSKDGINRISLTVVDARIFCLGVRIIKRLTVPEILSMIPEEPNGESFEDALARVCCCVGGGNANDNADSDSDLEVVSDTFSINLRCPMSGSRMKIAGRFKPCVHMGCFDLEVFVELNERSRKWQCPICLKNYALENIIIDPYFNRITTLMKNCGEEITEVEVKPDGFWRVKVKNESERRELGTLAHWHRPDGSLFVSTDEINKMENLKLKQEGVSDGHIGLKLRKNSNGVWEVSKPENTNTSSGNNRLNEDLENIEHVIIPMSSSDTGSGRDEDDPSVNQGGGGHIDYSTTNGIEIDSVFNSNIDSAYGYSVHNASAPIGDAEVIVISDSEEDNDVLMSPTPITGYTNNQTSAAVDVYSVLEPGILDSYTEDPNPGGNASLGVFNSHPSEDDFGMSSLWPLQSGTPAVPGFQLFSSEVEDVSDTLVGLQSGNINCSSSLNGYMLAPDTALGSSTLMPDSSVARPDDDLNGGLVDNPLAFPREDPSLQIFLPTKPAESSIQHELSDHADISNGVFTEDWITLSLGGGASGRNGDASTATGLNSRPQIASGEGASNSLTDTAPLHLGINDVRSDKANGKRSDSDSPFSFPRQKRSKLKKVEQHFWSSGNGR 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00457 885 SUPERFAMILY SAP domain 1 64 IPR036361 -
Vian11g00457 885 MobiDBLite consensus disorder prediction 846 875 - -
Vian11g00457 885 Pfam SAP domain 14 42 IPR003034 -
Vian11g00457 885 FunFam E3 SUMO-protein ligase SIZ1 1 66 - -
Vian11g00457 885 SMART PHD_3 113 165 IPR001965 -
Vian11g00457 885 ProSitePatterns Zinc finger PHD-type signature. 114 164 IPR019786 -
Vian11g00457 885 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 446 IPR013083 -
Vian11g00457 885 ProSiteProfiles Zinc finger SP-RING-type profile. 345 428 IPR004181 GO:0008270
Vian11g00457 885 MobiDBLite consensus disorder prediction 805 837 - -
Vian11g00457 885 CDD PHD_Bye1p_SIZ1_like 113 164 - -
Vian11g00457 885 Gene3D SAP domain 1 64 IPR036361 -
Vian11g00457 885 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Vian11g00457 885 Pfam MIZ/SP-RING zinc finger 358 406 IPR004181 GO:0008270
Vian11g00457 885 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 170 IPR013083 -
Vian11g00457 885 SMART sap_9 11 45 IPR003034 -
Vian11g00457 885 SUPERFAMILY FYVE/PHD zinc finger 108 168 IPR011011 -
Vian11g00457 885 CDD SP-RING_Siz-like 359 408 IPR031141 -
Vian11g00457 885 MobiDBLite consensus disorder prediction 538 560 - -
Vian11g00457 885 MobiDBLite consensus disorder prediction 803 885 - -
Vian11g00457 885 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00457 Vian-Chr11 4363500 4379532 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00457 - K22403 gmx:100803144 1493.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00457 11 4363500 4379532 Vian11g00457 11 4363500 4379532 ECH
Vian11g00457 11 4363500 4379532 Vian5g01214 5 34645302 34656890 PCT