Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00455 ATGGAGAGTGACGCAAACACCCTCTCTTCCTCTCCCACATTCTCTCATTCCTCCAATACCCTTTCTTCTTCTTCCCCTCCCCAAGTTGTCATGACCCCTTGTGCTGCATGCAAAATCCTTAGACGAAGATGTGCTGAGAAATGTGTGTTGGCACCGTATTTCCCTCCCACCGAACCCGCCAAGTTCACCATTGCTCACCGAGTCTTCGGTGCCAGCAACATCATCAAGTTCTTACAGGAACTTCCAGAGGGTCAGAGAGCTGATGCAGTGGCGAGCATGGTTTACGAGGCCGGTGCAAGAATAAGAGACCCTGTATACGGATCTGCAGGTGCAATTTGCCAGCTCCAAAAGCAAGTGAACGAACTTCAAGCACAGTTAGCAAAGGCACAAGCTGAGGTTGTAAACATGCAATTCCAACAAGCCAATCTCGTGGCTCTAATTTGCATGGAAATGTCACAGACTCCACAGGAATCACCCCAACAATCCCTGGACAATTTCATCACGAGTCCTTCCCACTATCAGAACAATCTCAGCTTCTTTGAGGATAACACCAACCTAAACTCTTTGTGGGAGCCTCTCTGGACATGA 588 0.4864 MESDANTLSSSPTFSHSSNTLSSSSPPQVVMTPCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPEGQRADAVASMVYEAGARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQFQQANLVALICMEMSQTPQESPQQSLDNFITSPSHYQNNLSFFEDNTNLNSLWEPLWT 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00455 195 MobiDBLite consensus disorder prediction 1 28 - -
Vian11g00455 195 Pfam Lateral organ boundaries (LOB) domain 33 130 IPR004883 -
Vian11g00455 195 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 32 160 - -
Vian11g00455 195 ProSiteProfiles LOB domain profile. 32 133 IPR004883 -
Vian11g00455 195 Coils Coil 112 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00455 Vian-Chr11 4340601 4341270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00455 1 195 AS2 family AT1G07900 62.626 2.59e-80 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vian11g00455 LOB 1.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00455 - - gmx:100819336 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00455 11 4340601 4341270 Vian11g00455 11 4340601 4341270 ECH
Vian11g00455 11 4340601 4341270 Vian5g01224 5 34799221 34800674 PCT