Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00451 ATGGATCCTTCTAGTGAACAACCCCAGCAAATGTCTAGCCAGACAGTGGAGAAGAAACCAAGGCCTAATCCAGAACAAGCTCTGAAATGCCCAAGATGCGATTCCACCAGCACAAAATTTTGCTACTACAACAACTATAGTCTTTCTCAGCCAAGATATTTCTGCAAGTCTTGCAGGAGATATTGGACCAAAGGAGGAACACTGAGGAATGTTCCAGTGGGAGGAGGATGCCGAAAGAAGCGATCATCATCATCATCATCGTTAAAGAGGGATCATGATCAGAGTTTCAAACCGAATCTTAACCCACTCACTACATTCCCTCAGCTGTGTTATGGCTCCAATGACTTCACTCTAGCATTAGCAAGACTTCAAAAACAATCATGTGGCCAATTGGGTTACAATGACAGTGAAATTTCTGCTCTGGGGAACCCCACAGGCTCGTTCTGTGACGTTCTGAGCAATTCAGGCATGAATCCCTACTCAGACCACCCTTCATTTTTGGACGCAATTCGAAGTGGGTTCCTTGAAACGCAAAACCATCTTCAGAATTTGTATTACATGTACGGAAATGGGGACATTGGGGAGGTAGATAATGGCAATTCTGGTGGAGTTGGAATCAGTGAAGAGATGATGCTCCCTTATAATCAAGTGATGAGCAATGCAGCCACTCAATCAGTGAGTGCATTACTGAAGCAAGAACAGTGTGGTGGCAGTGAGCAAAGTGAAAGGAAGCTGTTGGGGGGTTCGCCATGGCAGCTTAATGCAGACACAAACATTGCTGAAATTGATTCAGGAAGAGCAATTGAAAGTTGGAACAATTTCACATCTTCTTGGCATGGACTTCTCCAGAGTCCCCTAATGTAG 864 0.4456 MDPSSEQPQQMSSQTVEKKPRPNPEQALKCPRCDSTSTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKKRSSSSSSLKRDHDQSFKPNLNPLTTFPQLCYGSNDFTLALARLQKQSCGQLGYNDSEISALGNPTGSFCDVLSNSGMNPYSDHPSFLDAIRSGFLETQNHLQNLYYMYGNGDIGEVDNGNSGGVGISEEMMLPYNQVMSNAATQSVSALLKQEQCGGSEQSERKLLGGSPWQLNADTNIAEIDSGRAIESWNNFTSSWHGLLQSPLM 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00451 287 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 10 194 IPR045174 GO:0003700|GO:0006355
Vian11g00451 287 ProSitePatterns Zinc finger Dof-type signature. 30 66 IPR003851 GO:0003677|GO:0006355
Vian11g00451 287 MobiDBLite consensus disorder prediction 73 99 - -
Vian11g00451 287 MobiDBLite consensus disorder prediction 1 20 - -
Vian11g00451 287 MobiDBLite consensus disorder prediction 1 29 - -
Vian11g00451 287 Pfam Dof domain, zinc finger 26 82 IPR003851 GO:0003677|GO:0006355
Vian11g00451 287 ProSiteProfiles Zinc finger Dof-type profile. 28 82 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00451 Vian-Chr11 4295607 4296820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00451 26 287 C2C2-Dof Transcription Factor Family AT2G28510 40.146 2.24e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vian11g00451 zf-Dof 6.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00451 - - gmx:778104 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00451 11 4295607 4296820 Vian11g00451 11 4295607 4296820 ECH
Vian11g00451 11 4295607 4296820 Vian5g01227 5 34851676 34853008 PCT