Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00449 ATGGAGCAGTTCATCGAAAACTTGCCGCCGATGGATCTGATGCGATCTGAGAAGATGACCTTTATTCAGCTCATCATTCCGGCCGAGTCCGCACACCGCGCCATCTCCTATTTAGGCGAACTCGGTCTTCTCCAATTCCGCGACTTAAATGCTGATAAAAGTCCCTTCCAGAGAACATTTGTTAATCAGGTCAAACGATGTGCAGAAATGTCAAGAAAACTAAGATTCTTCAAGGATCAAATCAGTAAAGCTGGCCTCTTGTCTTCTTCTCGTACTGCATTGCAACCAGATATTGACTTGGAGGATTTGGAGATACAACTTGCTGAACATGAACATGAGCTGATTGAAATGAACTCTAATAGTGATAAACTCCGGCAATCATATAATGAACTCTTGGAATTCAAGATTGTATTACAAAAGGCATGTGGCTTTCTTGTTTCAAGTCATAACCTTGCACTTTCAGATGAAAGAGAACTACAAGAGAATGTATTTTCAAATGATGCCTATGTAGAGACAGCATCTTTGCTTGAACAGGAAAGGAGGCCTCAGTCATCAAATTCGTCTGGTTTAAGATTTATCAGTGGGATAATCTGTAAATCCAAGGTTCTTAGGTTTGAAAGAATGTTATTTCGTGCTACAAGAGGCAATATGCTATTCAACCAGGAACCAGCTGATGAACAAATCATGGATCCTGCTTCAACTGAGATGATTGAAAAAACAGTGTTTGTCGTGTTTTTCTCTGGGGAACAGGCAAGAACAAAGATTCTGAAAATTTGTGAGGCATTCGGTGCAAATTGTTATCCTGTTCCTGAAGATATTAGCAAGCAGAGGCAAATAACTAGAGAGGTTTCATCCCGTCTTACAGACTTAGAGGCAACTTTGGAAGCCGGGATTAGGCACCGGAACAAGGCTCTAGCTTCTGTTGCAGACCATCTAGGGAAATGGATGAACATGGTAAGAAGAGAGAAGGCTGTGTACGATACACTGAACATGTTAAACTTCGATGTTACAAAAAAATGTCTTGTGGGAGAGGGCTGGTGCCCTCTGCTTGCCAAAACACAGATGCAGGAGGCACTGCAACGTGCAACTTTTGATAGCAATTCTCAAGTTGGCATAATCTTCCATCCACTAGAGGCAGTGGAATCACCACCTACATACTTTCGGACCAACACTTTCACAAATCCATATCAAGAAATTGTTGATGCATACGGTGTTGCAAGATACCAAGAGGCGAATCCTGCAGTTTACACAACTATTATATTCCCTTTCCTATTTGCTATGATGTTTGGGGACTGGGGTCATGGAATTTGCCTGTTGCTAGGAGCATTGGTTCTTATAGCACGTGAAAACAAGCTCAGCACACAGAAACTTGGAAGCTTTATGGAGATGCTGTTTGGTGGGCGCTATGTGCTTCTTCTAATGGCTCTATTTTCAATCTATTGTGGCTTAATCTACAATGAATTCTTCTCTGTCCCTTTCCACATATTTGGTGCATCTGCATACAAATGCCGCGATAGTTCTTGCAGGGATGCACATACTATTGGTTTAGTCAAATACCAAGATCCATACCCATTTGGTGTGGATCCCAGCTGGCGTGGAAGTCGTTCAGAATTGCCTTTCCTGAATTCTTTGAAGATGAAGATGTCCATTTTGTTTGGTGTCGCACATATGAACTTAGGAATTATATTAAGTTATTTTAATGCACGGTTCTTTGGAAGCTCATTGGATATAAGGTACCAGTTTGTGCCACAGATGATTTTCCTTAACTGTCTATTTGGGTATCTTTCCCTTCTCATTGTTGTTAAGTGGTGTACTGGCTCTCAAGCAGACCTTTATCATGTAATGATATACATGTTTTTAAGCCCCACGGACAATCTTGGCGAGAATCAGTTGTTCTGGGGCCAAAGACCACTTCAAATTGTGTTATTGCTTTTGGCTGTAATTGCAGTTCCATGGATGCTCTTTCCAAAACCTTTTATATTAAAGAAGCTTCATACTGAGAGATTTCAAGGTCGTAGTTATGGCTTACTGAACACTTCTGAGGTGGATCTTGAGGCTGAGCCTGATTCTGCCAGACAACATCATGAAGAATTCAATTTCAGTGAAGTCTTTGTTCACCAAATGATCCATTCCATTGAATTTGTTCTAGGTTCTGTTTCTAATACAGCATCATATCTTCGTCTTTGGGCATTAAGTTTGGCTCACTCTGAACTTTCTACTGTTTTCTATGAGAAAGTCCTGCTTTTAGCTTGGGGATATGACAATCTTATCATTCGGTTGGTGGGGCTCACCGTTTTCTCCTTTGCAACTGCCTTTATACTACTAATGATGGAGAGTCTTAGTGCTTTTCTTCATGCGCTGCGGCTTCACTGGGTAGAATTCCAAAATAAATTCTACCATGGCGATGGCTATAAGTTCAGACCTTTTTCATTTGCTTCCTTAACGGAGGAAGATGATTGA 2460 0.411 MEQFIENLPPMDLMRSEKMTFIQLIIPAESAHRAISYLGELGLLQFRDLNADKSPFQRTFVNQVKRCAEMSRKLRFFKDQISKAGLLSSSRTALQPDIDLEDLEIQLAEHEHELIEMNSNSDKLRQSYNELLEFKIVLQKACGFLVSSHNLALSDERELQENVFSNDAYVETASLLEQERRPQSSNSSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQEPADEQIMDPASTEMIEKTVFVVFFSGEQARTKILKICEAFGANCYPVPEDISKQRQITREVSSRLTDLEATLEAGIRHRNKALASVADHLGKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPLLAKTQMQEALQRATFDSNSQVGIIFHPLEAVESPPTYFRTNTFTNPYQEIVDAYGVARYQEANPAVYTTIIFPFLFAMMFGDWGHGICLLLGALVLIARENKLSTQKLGSFMEMLFGGRYVLLLMALFSIYCGLIYNEFFSVPFHIFGASAYKCRDSSCRDAHTIGLVKYQDPYPFGVDPSWRGSRSELPFLNSLKMKMSILFGVAHMNLGIILSYFNARFFGSSLDIRYQFVPQMIFLNCLFGYLSLLIVVKWCTGSQADLYHVMIYMFLSPTDNLGENQLFWGQRPLQIVLLLLAVIAVPWMLFPKPFILKKLHTERFQGRSYGLLNTSEVDLEAEPDSARQHHEEFNFSEVFVHQMIHSIEFVLGSVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLIIRLVGLTVFSFATAFILLMMESLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFASLTEEDD 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00449 819 Coils Coil 100 127 - -
Vian11g00449 819 PANTHER VACUOLAR PROTON ATPASES 13 818 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vian11g00449 819 Pfam V-type ATPase 116kDa subunit family 37 811 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vian11g00449 819 PIRSF ATP6V0A1 9 819 IPR026028 GO:0000220|GO:0046961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00449 Vian-Chr11 4262767 4281767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00449 1 812 Primary Pumps ATPases(2) AT2G28520 80.491 0.0 1368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00449 K02154 - gmx:100793301 1561.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00449 11 4262767 4281767 Vian11g00449 11 4262767 4281767 ECH
Vian11g00449 11 4262767 4281767 Vian5g01233 5 34949359 34953774 PCT