Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00445 ATGTTGGATCTTAATCTGAATGCCGACTCGACTCAGAGCCAAGACTCGGTGATGCTGTTGGACAAGTTTCCCGAAGCTTCTTCGGGAACTTCGAATTCCTCCGTGGTGAATGCGGAAGGGTCGAGTAACGAGGACTCGTGTTCGACACGCGCCGGTGAAGTGTTCACCTTCAATTTCGGAATCCTTAAGGTCGAAGGTGCCGACGACGTCGTCGTCTCAGCGACGAAGGAGCTGTTTCCGGCGAGCGCGGAGAATTGGCAAGGACAGAGTTCGACGTCGTCGTTTCAGGCTAGGAAGAGTTTGGTGGATCTCTCGCTGGATCGCCAAAACGGCGAGGTGAAGGTGGTTCAGGTTCAGCAACAACCTCAGGTGAAGAAGTGTAGGAGAGGTCCACGGTCTCGGAGCTCTCAGTACAGAGGAGTCACCTTCTACAGAAGGACCGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGCGGATTTGACACCGCTCATGCCGCAGCCAGGGCCTATGATCGAGCTGCAATTAAGTTCAGGGGACTTGATGCGGATATCAATTTTAATCTTGTTGATTATGAGGAGGATTTAAAACAGATGAAAAATCTTTCCAAGGAGGAGTTCGTGCACATACTCCGCCGTCACAGTACCGGTTTCTCAAGGGGGAGTTCAAAATACCGGGGAGTGACACTTCACAAATGTGGCCGGTGGGAAGCTCGAATGGGACAATTCCTTCGAAAAAAGTATATATATCTTGGGCTTTTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCAATCAAGTGCAATGGAAGAGAGGCAGTGACTAACTTTGAGCCAAGTACATATGACAGCGAAATGAAACCTGAAGCTATCAATGAAGGTGGCAATCACGATCTTGATCTCAATCTGGGCATAGCAACTCCAGGACATGGTCCCAAAGAAAACATAGGTCATCTTCAGTTCCAGCATGTCCCATGCAGCACGCAACCCGGAAGAATTTCAAGGATGGAGACTAATTTTAGTTCAGTTATTGGTGATCCTTCTTTGAAAAGGCATGTTGTAACTGAAGAGCGTCCTTCTGTATGGAACGCCGCACATTACACTTTCTTTCCCAATCTGGAAAGAGCAGAGAGAATCGGCATAGATCCTTCAAAAGGAGTCCCCAACTGGGCGTGGCAAACACATGGCCAGGTTACTGCCAACCCAGTACCACCGTTCTCTTCTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCACCGAATGCCATCTTTCCAACAAAATCAGTGAACTCAATTCCGCAGAACCTCTGTTTCACTTCAGCCAGTGCACCAGGTAGCAATACACCGCAATTCTATTACGAGGTCAAGTCCACTCAGGCACCATCCCATCCTATCTAG 1428 0.4881 MLDLNLNADSTQSQDSVMLLDKFPEASSGTSNSSVVNAEGSSNEDSCSTRAGEVFTFNFGILKVEGADDVVVSATKELFPASAENWQGQSSTSSFQARKSLVDLSLDRQNGEVKVVQVQQQPQVKKCRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVDYEEDLKQMKNLSKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLRKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYDSEMKPEAINEGGNHDLDLNLGIATPGHGPKENIGHLQFQHVPCSTQPGRISRMETNFSSVIGDPSLKRHVVTEERPSVWNAAHYTFFPNLERAERIGIDPSKGVPNWAWQTHGQVTANPVPPFSSAASSGFSISATFPPNAIFPTKSVNSIPQNLCFTSASAPGSNTPQFYYEVKSTQAPSHPI 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00445 475 SUPERFAMILY DNA-binding domain 228 287 IPR016177 GO:0003677
Vian11g00445 475 PRINTS Ethylene responsive element binding protein signature 268 288 IPR001471 GO:0003700|GO:0006355
Vian11g00445 475 PRINTS Ethylene responsive element binding protein signature 230 241 IPR001471 GO:0003700|GO:0006355
Vian11g00445 475 SMART rav1_2 229 292 IPR001471 GO:0003700|GO:0006355
Vian11g00445 475 SMART rav1_2 137 199 IPR001471 GO:0003700|GO:0006355
Vian11g00445 475 SUPERFAMILY DNA-binding domain 136 193 IPR016177 GO:0003677
Vian11g00445 475 ProSiteProfiles AP2/ERF domain profile. 137 193 IPR001471 GO:0003700|GO:0006355
Vian11g00445 475 Pfam AP2 domain 228 278 IPR001471 GO:0003700|GO:0006355
Vian11g00445 475 Pfam AP2 domain 137 185 IPR001471 GO:0003700|GO:0006355
Vian11g00445 475 Gene3D AP2/ERF domain 136 195 IPR036955 GO:0003700|GO:0006355
Vian11g00445 475 Gene3D AP2/ERF domain 228 287 IPR036955 GO:0003700|GO:0006355
Vian11g00445 475 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 79 317 - -
Vian11g00445 475 CDD AP2 228 288 IPR001471 GO:0003700|GO:0006355
Vian11g00445 475 ProSiteProfiles AP2/ERF domain profile. 229 286 IPR001471 GO:0003700|GO:0006355
Vian11g00445 475 CDD AP2 136 192 IPR001471 GO:0003700|GO:0006355
Vian11g00445 475 FunFam AP2-like ethylene-responsive transcription factor 136 195 - -
Vian11g00445 475 MobiDBLite consensus disorder prediction 25 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00445 Vian-Chr11 4208972 4212278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00445 1 432 AP2-EREBP Transcription Factor Family AT5G60120 46.203 9.17e-96 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Vian11g00445 AP2 2.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00445 K09284 - gmx:100777102 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00445 11 4208972 4212278 Vian11g00445 11 4208972 4212278 ECH
Vian11g00445 11 4208972 4212278 Vian5g01238 5 35012133 35015456 PCT