Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00418 ATGGCTCCCAAAGCTGATAGTTCAAAGAAGGCCGATCCTAAGGCACAAGCCTTGAAAACTGCTAAAGCAGTTAAGTCAGGTGCTACATTTAAGAAGAAGGCCAAAAAGATCCGAACTTCTGTAACCTTCCATCGGCCAAAGACTTTGAAAAAGGATAGGAACCCCAAATACCCACGCAACAGTGCTCCACCCAGGAATAAGCTTGATCACTATCAGATACTGAAGTATCCTCTAACAACTGAGTCCGCAATGAAGAAGATCGAAGACAACAACACTTTGGTATTCATTGTTGACCTGCGGGCTGACAAGAAGAAGATCAAGGACGCAGTGAAGAAGATGTATGATATTCAGGCGAAGAAAGTTAACACCTTGATCAGGCCTGATGGGACTAAGAAGGCTTATGTCAGATTGACACCTGACTATGATGCCCTGGACGTGGCCAACAAGATTGGAATTATCTAA 462 0.4394 MAPKADSSKKADPKAQALKTAKAVKSGATFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRNSAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00418 153 MobiDBLite consensus disorder prediction 26 44 - -
Vian11g00418 153 Hamap 50S ribosomal protein L23 [rplW]. 73 153 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vian11g00418 153 Pfam Ribosomal protein L23 73 135 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vian11g00418 153 MobiDBLite consensus disorder prediction 1 16 - -
Vian11g00418 153 NCBIfam 50S ribosomal protein L23 77 153 IPR019985 GO:0003735|GO:0005840|GO:0006412
Vian11g00418 153 MobiDBLite consensus disorder prediction 1 66 - -
Vian11g00418 153 Pfam Ribosomal protein L23, N-terminal domain 14 63 IPR005633 -
Vian11g00418 153 FunFam 60S ribosomal protein L23a 33 153 - -
Vian11g00418 153 ProSitePatterns Ribosomal protein L23 signature. 131 146 IPR001014 GO:0019843
Vian11g00418 153 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 70 146 IPR012678 GO:0003735|GO:0005840|GO:0006412
Vian11g00418 153 Gene3D - 34 153 IPR012677 -
Vian11g00418 153 PANTHER 60S RIBOSOMAL PROTEIN L23A 6 153 IPR013025 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00418 Vian-Chr11 3912426 3913516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00418 1 153 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 87.013 2.49e-67 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00418 K02893 - jre:109021970 268.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00418 11 3912426 3913516 Vian5g01274 5 35526912 35528326 PCT