Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00411 ATGGCTAACTGTCTGATGCTATTGACCAAAGTTGGTGAGAGTGAAGCCAACGCAACATCTAAGGGTAGAGATATAAGGGATGGTGAAATTGGTGATTTCAAGTGCAAAACTTGCAATAGAAGGTTTTCTTCTTTTCAAGCACTTGGTGGGCACAGAGCAAGTCACAAGAAACCAAAGCTCATGATCACTGATCTTTCGTGCCGTCACCAGTTACCTTGTACTCCAACCACCAAACAACAACCTCGGATGCACCCGTGTCCCATTTGTGGGCTTCAGTTTGCCATTGGACAAGCATTGGGAGGGCACATGAGGAAACATAGAACTGCCATTAATGATGGTCTGTTGAATAATCGGAGAGATTCGGATTCTTTGTCCATTCTGAAGAAATCTAAAAATGGTGGAAGGTTGAATTTGTGTTTGGACTTGAACTTGATGCCATTGGAGGATGATGATCTTAAGCTCAATCTAAGAACACCCGTTCTCAATTGTTTCATTTGA 498 0.4257 MANCLMLLTKVGESEANATSKGRDIRDGEIGDFKCKTCNRRFSSFQALGGHRASHKKPKLMITDLSCRHQLPCTPTTKQQPRMHPCPICGLQFAIGQALGGHMRKHRTAINDGLLNNRRDSDSLSILKKSKNGGRLNLCLDLNLMPLEDDDLKLNLRTPVLNCFI 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00411 165 SUPERFAMILY beta-beta-alpha zinc fingers 33 106 IPR036236 -
Vian11g00411 165 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
Vian11g00411 165 SMART c2h2final6 84 106 IPR013087 -
Vian11g00411 165 SMART c2h2final6 33 55 IPR013087 -
Vian11g00411 165 Gene3D Classic Zinc Finger 30 106 - -
Vian11g00411 165 Pfam C2H2-type zinc finger 33 58 - -
Vian11g00411 165 Pfam C2H2-type zinc finger 84 108 - -
Vian11g00411 165 PANTHER ZINC FINGER PROTEIN ZAT5 1 150 - -
Vian11g00411 165 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Vian11g00411 165 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00411 Vian-Chr11 3844464 3844961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00411 1 156 C2H2 Transcription Factor Family AT2G28710 45.223 2.02e-35 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian11g00411 zf-C2H2_6 2.7e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00411 - - vra:106758971 286.189